Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.41□□□□□ -1.86
SHOX2O60902 AC084033.1-201ENST00000550830 633 ntBASIC3.41□□□□□ -1.86
SHOX2O60902 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.41□□□□□ -1.86
SHOX2O60902 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.41□□□□□ -1.86
SHOX2O60902 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC3.41□□□□□ -1.86
SHOX2O60902 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.41□□□□□ -1.86
SHOX2O60902 AL606490.9-201ENST00000603331 271 ntBASIC3.41□□□□□ -1.86
SHOX2O60902 U3.45-201ENST00000607547 219 ntBASIC3.41□□□□□ -1.86
SHOX2O60902 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 FP236240.3-201ENST00000623061 327 ntBASIC3.41□□□□□ -1.86
SHOX2O60902 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
SHOX2O60902 SCARNA15.3-201ENST00000626315 122 ntBASIC3.41□□□□□ -1.86
SHOX2O60902 SCARNA4.1-201ENST00000628597 123 ntBASIC3.41□□□□□ -1.86
SHOX2O60902 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SHOX2O60902 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SHOX2O60902 MTND5P7-201ENST00000413558 1798 ntBASIC3.4□□□□□ -1.86
SHOX2O60902 MTND5P24-201ENST00000438892 1767 ntBASIC3.4□□□□□ -1.86
SHOX2O60902 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.86
SHOX2O60902 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
SHOX2O60902 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.4□□□□□ -1.86
SHOX2O60902 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.4□□□□□ -1.86
SHOX2O60902 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
SHOX2O60902 AL353743.1-202ENST00000431724 1695 ntBASIC3.4□□□□□ -1.86
SHOX2O60902 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SHOX2O60902 SPRR2C-201ENST00000290702 219 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 RNU6-819P-201ENST00000364116 107 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SHOX2O60902 RNU1-13P-201ENST00000384499 162 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 RNU6-628P-201ENST00000410675 107 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 RN7SKP284-201ENST00000411002 343 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC004022.2-201ENST00000413824 193 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.4□□□□□ -1.87
SHOX2O60902 AL117339.2-201ENST00000430475 180 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 OR4C10P-201ENST00000434991 931 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 Z99127.3-201ENST00000448158 395 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC115115.1-201ENST00000449927 248 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.4□□□□□ -1.87
SHOX2O60902 RPL7P5-201ENST00000471472 736 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 RPL21P103-201ENST00000479921 488 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AP001086.1-201ENST00000494882 321 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.4□□□□□ -1.87
SHOX2O60902 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.4□□□□□ -1.87
SHOX2O60902 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC024224.1-201ENST00000538284 609 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC021755.1-201ENST00000559747 1447 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.4□□□□□ -1.87
SHOX2O60902 AP005205.1-201ENST00000563503 508 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC006270.2-201ENST00000578523 652 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC012468.1-201ENST00000604888 430 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC105429.2-201ENST00000610567 517 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC069234.5-201ENST00000611056 416 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 AC084757.4-201ENST00000616350 526 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.4□□□□□ -1.87
SHOX2O60902 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.4□□□□□ -1.87
SHOX2O60902 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.4□□□□□ -1.87
SHOX2O60902 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SHOX2O60902 AL021368.2-201ENST00000606125 5352 ntBASIC3.4□□□□□ -1.87
SHOX2O60902 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.4□□□□□ -1.87
SHOX2O60902 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SHOX2O60902 AF117829.1-206ENST00000621883 3802 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SHOX2O60902 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SHOX2O60902 FRG1CP-201ENST00000358464 769 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNA5SP432-201ENST00000362480 116 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNA5SP119-201ENST00000362715 117 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNA5SP283-201ENST00000365604 119 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.39□□□□□ -1.87
SHOX2O60902 RNU6-213P-201ENST00000384051 104 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
SHOX2O60902 SNORA48.8-201ENST00000391324 134 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SHOX2O60902 RPL7P60-201ENST00000397636 735 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNU6ATAC-201ENST00000408749 126 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNU6-564P-201ENST00000410983 104 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNF19BPX-201ENST00000426224 625 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.39□□□□□ -1.87
SHOX2O60902 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.39□□□□□ -1.87
SHOX2O60902 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.39□□□□□ -1.87
SHOX2O60902 AC091959.2-201ENST00000477363 321 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 MTATP6P22-201ENST00000507369 598 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 RNA5SP76-201ENST00000516277 87 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 SNORA70.17-201ENST00000516449 133 ntBASIC3.39□□□□□ -1.87
SHOX2O60902 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.39□□□□□ -1.87
SHOX2O60902 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.39□□□□□ -1.87
SHOX2O60902 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.39□□□□□ -1.87
SHOX2O60902 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.39□□□□□ -1.87
SHOX2O60902 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms