Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 MIR3180-1-201ENST00000580374 94 ntBASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 MIR3180-3-201ENST00000584616 94 ntBASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTCBQ9Y3I0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 UNC93B7-201ENST00000509439 705 ntBASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC24.31■■□□□ 1.48
RTCBQ9Y3I0 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 PVRIG2P-201ENST00000435460 978 ntBASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 KRT17P6-201ENST00000453795 1220 ntBASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
RTCBQ9Y3I0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 FAAHP1-202ENST00000446499 1238 ntBASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 AC009237.14-201ENST00000609975 1594 ntBASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTCBQ9Y3I0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 KRT8P10-201ENST00000450021 1447 ntBASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 AP000347.1-202ENST00000435868 847 ntBASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 AP002383.4-201ENST00000442518 975 ntBASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC24.28■■□□□ 1.48
RTCBQ9Y3I0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.27■■□□□ 1.48
RTCBQ9Y3I0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms