Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
DDX41Q9UJV9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
DDX41Q9UJV9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.14■■□□□ 1.14
DDX41Q9UJV9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 AC010331.1-201ENST00000611423 582 ntBASIC22.14■■□□□ 1.13
DDX41Q9UJV9 MIR6786-201ENST00000616843 113 ntBASIC22.14■■□□□ 1.13
DDX41Q9UJV9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
DDX41Q9UJV9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 CYP2D8P-201ENST00000433633 1490 ntBASIC22.13■■□□□ 1.13
DDX41Q9UJV9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
DDX41Q9UJV9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 AC004980.1-204ENST00000429707 299 ntBASIC22.12■■□□□ 1.13
DDX41Q9UJV9 AC026271.3-201ENST00000571884 352 ntBASIC22.12■■□□□ 1.13
DDX41Q9UJV9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
DDX41Q9UJV9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 FSCN1P1-201ENST00000568912 1481 ntBASIC22.11■■□□□ 1.13
DDX41Q9UJV9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 AC020907.5-201ENST00000624372 1936 ntBASIC22.11■■□□□ 1.13
DDX41Q9UJV9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
DDX41Q9UJV9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 AC011506.1-201ENST00000474329 610 ntBASIC22.1■■□□□ 1.13
DDX41Q9UJV9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.1■■□□□ 1.13
DDX41Q9UJV9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms