Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 FER1L4-210ENST00000615531 5998 ntBASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 BID-214ENST00000617586 542 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 AL049812.1-201ENST00000432563 2267 ntBASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 AC231657.2-201ENST00000624556 255 ntBASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CHMP1AQ9HD42 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 C2orf69P4-201ENST00000565394 541 ntBASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 AC005332.8-201ENST00000622750 2735 ntBASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 LINC01465-201ENST00000408887 1940 ntBASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CHMP1AQ9HD42 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CHMP1AQ9HD42 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms