Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 SLC25A1P2-201ENST00000430693 912 ntBASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 MFAP1P1-201ENST00000442257 1255 ntBASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 AL445228.2-201ENST00000605589 952 ntBASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 FAM87A-204ENST00000613235 858 ntBASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAIPQ9BWF2 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 AL049597.2-201ENST00000565575 961 ntBASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.09■□□□□ 0.97
TRAIPQ9BWF2 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 ECEL1P2-202ENST00000465689 757 ntBASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 AC010203.1-204ENST00000548782 407 ntBASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.08■□□□□ 0.97
TRAIPQ9BWF2 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRAIPQ9BWF2 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRAIPQ9BWF2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 KRT18P57-201ENST00000443599 1254 ntBASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAIPQ9BWF2 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.06■□□□□ 0.96
TRAIPQ9BWF2 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms