Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC233702.5-201ENST00000584107 538 ntBASIC17.56■□□□□ 0.4
NPAS1Q99742 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.56■□□□□ 0.4
NPAS1Q99742 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
NPAS1Q99742 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.56■□□□□ 0.4
NPAS1Q99742 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.56■□□□□ 0.4
NPAS1Q99742 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
NPAS1Q99742 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
NPAS1Q99742 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
NPAS1Q99742 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
NPAS1Q99742 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
NPAS1Q99742 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.55■□□□□ 0.4
NPAS1Q99742 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.55■□□□□ 0.4
NPAS1Q99742 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
NPAS1Q99742 FAM197Y1-201ENST00000421178 764 ntBASIC17.55■□□□□ 0.4
NPAS1Q99742 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NPAS1Q99742 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.55■□□□□ 0.4
NPAS1Q99742 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.55■□□□□ 0.4
NPAS1Q99742 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.55■□□□□ 0.4
NPAS1Q99742 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.55■□□□□ 0.4
NPAS1Q99742 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.55■□□□□ 0.4
NPAS1Q99742 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.55■□□□□ 0.4
NPAS1Q99742 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.55■□□□□ 0.4
NPAS1Q99742 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.55■□□□□ 0.4
NPAS1Q99742 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.55■□□□□ 0.4
NPAS1Q99742 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NPAS1Q99742 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
NPAS1Q99742 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.54■□□□□ 0.4
NPAS1Q99742 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.54■□□□□ 0.4
NPAS1Q99742 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 AP002982.1-201ENST00000492365 877 ntBASIC17.54■□□□□ 0.4
NPAS1Q99742 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.54■□□□□ 0.4
NPAS1Q99742 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.54■□□□□ 0.4
NPAS1Q99742 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.54■□□□□ 0.4
NPAS1Q99742 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.54■□□□□ 0.4
NPAS1Q99742 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.54■□□□□ 0.4
NPAS1Q99742 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.54■□□□□ 0.4
NPAS1Q99742 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.54■□□□□ 0.4
NPAS1Q99742 AL353708.3-201ENST00000610272 989 ntBASIC17.54■□□□□ 0.4
NPAS1Q99742 CR392000.1-201ENST00000624770 1228 ntBASIC17.54■□□□□ 0.4
NPAS1Q99742 AL049637.2-201ENST00000641778 930 ntBASIC17.54■□□□□ 0.4
NPAS1Q99742 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
NPAS1Q99742 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
NPAS1Q99742 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
NPAS1Q99742 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.53■□□□□ 0.4
NPAS1Q99742 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
NPAS1Q99742 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
NPAS1Q99742 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.53■□□□□ 0.4
NPAS1Q99742 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.53■□□□□ 0.4
NPAS1Q99742 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.53■□□□□ 0.4
NPAS1Q99742 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 AC012618.2-201ENST00000428058 849 ntBASIC17.53■□□□□ 0.4
NPAS1Q99742 TSPY7P-201ENST00000431358 1114 ntBASIC17.53■□□□□ 0.4
NPAS1Q99742 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.53■□□□□ 0.4
NPAS1Q99742 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.53■□□□□ 0.4
NPAS1Q99742 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
NPAS1Q99742 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NPAS1Q99742 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS1Q99742 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.52■□□□□ 0.4
NPAS1Q99742 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.52■□□□□ 0.4
NPAS1Q99742 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.52■□□□□ 0.4
NPAS1Q99742 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.52■□□□□ 0.4
NPAS1Q99742 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
NPAS1Q99742 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS1Q99742 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.52■□□□□ 0.4
NPAS1Q99742 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NPAS1Q99742 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms