Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 TEX21P-204ENST00000641479 1693 ntBASIC14.43□□□□□ -0.1
LINC00477Q96M19 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 AC006970.2-201ENST00000450065 779 ntBASIC14.43□□□□□ -0.1
LINC00477Q96M19 AC097658.1-201ENST00000475555 843 ntBASIC14.43□□□□□ -0.1
LINC00477Q96M19 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 MIR4758-201ENST00000577688 71 ntBASIC14.43□□□□□ -0.1
LINC00477Q96M19 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00477Q96M19 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 CROCCP5-201ENST00000436658 830 ntBASIC14.42□□□□□ -0.1
LINC00477Q96M19 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 REXO2-208ENST00000539754 791 ntTSL 2 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 IKBKGP1-201ENST00000612193 1073 ntBASIC14.42□□□□□ -0.1
LINC00477Q96M19 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 HLA-B-256ENST00000639848 1089 ntBASIC14.42□□□□□ -0.1
LINC00477Q96M19 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.42□□□□□ -0.1
LINC00477Q96M19 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00477Q96M19 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 DLX3-202ENST00000512495 834 ntTSL 2 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 AC092368.3-202ENST00000574180 1591 ntBASIC14.41□□□□□ -0.1
LINC00477Q96M19 AC104417.2-201ENST00000562989 1793 ntBASIC14.41□□□□□ -0.1
LINC00477Q96M19 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00477Q96M19 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC14.41□□□□□ -0.1
LINC00477Q96M19 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms