Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRCH3Q96II8 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRCH3Q96II8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LRCH3Q96II8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LRCH3Q96II8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.88■□□□□ 0.93
LRCH3Q96II8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.88■□□□□ 0.93
LRCH3Q96II8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRCH3Q96II8 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRCH3Q96II8 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 MIR2861-201ENST00000636310 90 ntBASIC20.87■□□□□ 0.93
LRCH3Q96II8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.87■□□□□ 0.93
LRCH3Q96II8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 CHCHD2P8-201ENST00000429873 447 ntBASIC20.86■□□□□ 0.93
LRCH3Q96II8 LINC00265-3P-201ENST00000447588 903 ntBASIC20.86■□□□□ 0.93
LRCH3Q96II8 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 KRT8P26-201ENST00000534154 1276 ntBASIC20.86■□□□□ 0.93
LRCH3Q96II8 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 AC011484.1-201ENST00000377652 1995 ntBASIC20.86■□□□□ 0.93
LRCH3Q96II8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.86■□□□□ 0.93
LRCH3Q96II8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
LRCH3Q96II8 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRCH3Q96II8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 TFP1-202ENST00000475455 1573 ntBASIC20.85■□□□□ 0.93
LRCH3Q96II8 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 TPSP2-201ENST00000561760 610 ntBASIC20.85■□□□□ 0.93
LRCH3Q96II8 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.85■□□□□ 0.93
LRCH3Q96II8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRCH3Q96II8 PMS2P7-201ENST00000506558 1336 ntBASIC20.84■□□□□ 0.93
LRCH3Q96II8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 RNA5SP419-201ENST00000515908 135 ntBASIC20.84■□□□□ 0.93
LRCH3Q96II8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LRCH3Q96II8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRCH3Q96II8 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRCH3Q96II8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRCH3Q96II8 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRCH3Q96II8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRCH3Q96II8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms