Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 AC110285.5-201ENST00000611501 352 ntBASIC18.42■□□□□ 0.54
VMP1Q96GC9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 AC066615.1-201ENST00000640911 628 ntBASIC18.42■□□□□ 0.54
VMP1Q96GC9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VMP1Q96GC9 AC005332.7-201ENST00000614046 2005 ntBASIC18.42■□□□□ 0.54
VMP1Q96GC9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VMP1Q96GC9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 PHGDH-210ENST00000641115 1638 ntBASIC18.41■□□□□ 0.54
VMP1Q96GC9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 AC116351.2-201ENST00000606540 1585 ntBASIC18.41■□□□□ 0.54
VMP1Q96GC9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VMP1Q96GC9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.41■□□□□ 0.54
VMP1Q96GC9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.4■□□□□ 0.54
VMP1Q96GC9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VMP1Q96GC9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
VMP1Q96GC9 NBPF21P-201ENST00000425093 1451 ntBASIC18.39■□□□□ 0.54
VMP1Q96GC9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.39■□□□□ 0.54
VMP1Q96GC9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
VMP1Q96GC9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.39■□□□□ 0.54
VMP1Q96GC9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VMP1Q96GC9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.39■□□□□ 0.53
VMP1Q96GC9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
VMP1Q96GC9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.39■□□□□ 0.53
VMP1Q96GC9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VMP1Q96GC9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.39■□□□□ 0.53
VMP1Q96GC9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms