Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 AC079598.2-202ENST00000546624 1451 ntBASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 AC116562.2-201ENST00000507042 360 ntBASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 AC131212.4-201ENST00000623606 975 ntBASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 HCG11-201ENST00000411553 5696 ntBASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP3Q96DZ5 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 FAM210CP-201ENST00000445714 574 ntBASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 LINC01521-201ENST00000504184 1943 ntBASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 AP001271.2-201ENST00000624018 1556 ntBASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP3Q96DZ5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 FSCN1P1-201ENST00000568912 1481 ntBASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 TMEM179-206ENST00000616017 1645 ntBASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 AC087289.5-201ENST00000586076 3175 ntBASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 AC099778.1-201ENST00000568593 1911 ntBASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 AL162377.1-201ENST00000618844 1793 ntBASIC18.53■□□□□ 0.56
CLIP3Q96DZ5 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 AC026271.3-201ENST00000571884 352 ntBASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 AC097493.4-201ENST00000641197 219 ntBASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.52■□□□□ 0.56
CLIP3Q96DZ5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CLIP3Q96DZ5 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.52■□□□□ 0.55
CLIP3Q96DZ5 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms