Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BRF1Q92994 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BRF1Q92994 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.68■■□□□ 1.22
BRF1Q92994 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.68■■□□□ 1.22
BRF1Q92994 ITM2C-210ENST00000620962 501 ntBASIC22.68■■□□□ 1.22
BRF1Q92994 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF1Q92994 TNXA-203ENST00000507684 2038 ntBASIC22.68■■□□□ 1.22
BRF1Q92994 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
BRF1Q92994 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.68■■□□□ 1.22
BRF1Q92994 AL020996.1-203ENST00000536896 2307 ntBASIC22.68■■□□□ 1.22
BRF1Q92994 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF1Q92994 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.68■■□□□ 1.22
BRF1Q92994 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRF1Q92994 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC22.67■■□□□ 1.22
BRF1Q92994 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
BRF1Q92994 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.67■■□□□ 1.22
BRF1Q92994 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
BRF1Q92994 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.67■■□□□ 1.22
BRF1Q92994 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
BRF1Q92994 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.67■■□□□ 1.22
BRF1Q92994 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.67■■□□□ 1.22
BRF1Q92994 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
BRF1Q92994 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC22.67■■□□□ 1.22
BRF1Q92994 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.22
BRF1Q92994 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRF1Q92994 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
BRF1Q92994 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.66■■□□□ 1.22
BRF1Q92994 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
BRF1Q92994 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.66■■□□□ 1.22
BRF1Q92994 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
BRF1Q92994 KRT18P29-201ENST00000397031 1267 ntBASIC22.66■■□□□ 1.22
BRF1Q92994 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.66■■□□□ 1.22
BRF1Q92994 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.66■■□□□ 1.22
BRF1Q92994 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.66■■□□□ 1.22
BRF1Q92994 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
BRF1Q92994 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
BRF1Q92994 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRF1Q92994 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
BRF1Q92994 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF1Q92994 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF1Q92994 RNF165-205ENST00000588679 2904 ntBASIC22.65■■□□□ 1.22
BRF1Q92994 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC22.65■■□□□ 1.22
BRF1Q92994 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.65■■□□□ 1.22
BRF1Q92994 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF1Q92994 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF1Q92994 PRORSD1P-201ENST00000295112 541 ntBASIC22.65■■□□□ 1.22
BRF1Q92994 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.65■■□□□ 1.22
BRF1Q92994 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
BRF1Q92994 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.65■■□□□ 1.22
BRF1Q92994 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.65■■□□□ 1.22
BRF1Q92994 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.65■■□□□ 1.22
BRF1Q92994 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.65■■□□□ 1.22
BRF1Q92994 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.65■■□□□ 1.22
BRF1Q92994 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BRF1Q92994 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.65■■□□□ 1.22
BRF1Q92994 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC22.65■■□□□ 1.22
BRF1Q92994 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
BRF1Q92994 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRF1Q92994 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.22
BRF1Q92994 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
BRF1Q92994 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.22
BRF1Q92994 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRF1Q92994 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRF1Q92994 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
BRF1Q92994 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRF1Q92994 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
BRF1Q92994 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.22
BRF1Q92994 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
BRF1Q92994 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRF1Q92994 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.64■■□□□ 1.21
BRF1Q92994 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRF1Q92994 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
BRF1Q92994 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.64■■□□□ 1.21
BRF1Q92994 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC22.64■■□□□ 1.21
BRF1Q92994 AL160286.2-201ENST00000567150 934 ntBASIC22.64■■□□□ 1.21
BRF1Q92994 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.64■■□□□ 1.21
BRF1Q92994 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
BRF1Q92994 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
BRF1Q92994 AL359736.2-201ENST00000621992 437 ntBASIC22.64■■□□□ 1.21
BRF1Q92994 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRF1Q92994 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRF1Q92994 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRF1Q92994 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
BRF1Q92994 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.63■■□□□ 1.21
BRF1Q92994 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
BRF1Q92994 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms