Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC23.6■■□□□ 1.37
USP48Q86UV5 AC026396.1-201ENST00000419388 421 ntBASIC23.6■■□□□ 1.37
USP48Q86UV5 TSPY5P-201ENST00000426936 936 ntBASIC23.6■■□□□ 1.37
USP48Q86UV5 AC004980.1-204ENST00000429707 299 ntBASIC23.6■■□□□ 1.37
USP48Q86UV5 YBX1P2-201ENST00000489612 999 ntBASIC23.6■■□□□ 1.37
USP48Q86UV5 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC23.6■■□□□ 1.37
USP48Q86UV5 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC23.6■■□□□ 1.37
USP48Q86UV5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC23.6■■□□□ 1.37
USP48Q86UV5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
USP48Q86UV5 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC23.6■■□□□ 1.37
USP48Q86UV5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.6■■□□□ 1.37
USP48Q86UV5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP48Q86UV5 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP48Q86UV5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP48Q86UV5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
USP48Q86UV5 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC23.59■■□□□ 1.37
USP48Q86UV5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC23.59■■□□□ 1.37
USP48Q86UV5 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.59■■□□□ 1.37
USP48Q86UV5 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP48Q86UV5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.59■■□□□ 1.37
USP48Q86UV5 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC23.59■■□□□ 1.37
USP48Q86UV5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.58■■□□□ 1.37
USP48Q86UV5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.58■■□□□ 1.37
USP48Q86UV5 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.58■■□□□ 1.37
USP48Q86UV5 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
USP48Q86UV5 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP48Q86UV5 HIST1H2APS4-201ENST00000362070 348 ntBASIC23.58■■□□□ 1.37
USP48Q86UV5 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
USP48Q86UV5 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
USP48Q86UV5 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC23.58■■□□□ 1.37
USP48Q86UV5 DUSP5P1-201ENST00000441325 1139 ntBASIC23.58■■□□□ 1.37
USP48Q86UV5 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
USP48Q86UV5 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP48Q86UV5 DBP-204ENST00000599385 709 ntTSL 3 BASIC23.58■■□□□ 1.37
USP48Q86UV5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC23.58■■□□□ 1.37
USP48Q86UV5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP48Q86UV5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
USP48Q86UV5 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
USP48Q86UV5 AP006587.1-201ENST00000534129 1502 ntBASIC23.58■■□□□ 1.36
USP48Q86UV5 KRT8P20-201ENST00000423953 1409 ntBASIC23.58■■□□□ 1.36
USP48Q86UV5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.58■■□□□ 1.36
USP48Q86UV5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
USP48Q86UV5 PCED1CP-201ENST00000419887 785 ntBASIC23.57■■□□□ 1.36
USP48Q86UV5 AC131212.4-201ENST00000623606 975 ntBASIC23.57■■□□□ 1.36
USP48Q86UV5 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP48Q86UV5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
USP48Q86UV5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.56■■□□□ 1.36
USP48Q86UV5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.56■■□□□ 1.36
USP48Q86UV5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.56■■□□□ 1.36
USP48Q86UV5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC23.56■■□□□ 1.36
USP48Q86UV5 IPPK-202ENST00000375522 882 ntTSL 3 BASIC23.56■■□□□ 1.36
USP48Q86UV5 CD70-202ENST00000423145 881 ntTSL 2 BASIC23.56■■□□□ 1.36
USP48Q86UV5 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC23.56■■□□□ 1.36
USP48Q86UV5 AC092647.4-201ENST00000457211 535 ntBASIC23.56■■□□□ 1.36
USP48Q86UV5 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 CD320-202ENST00000537716 1119 ntTSL 2 BASIC23.56■■□□□ 1.36
USP48Q86UV5 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.56■■□□□ 1.36
USP48Q86UV5 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC23.56■■□□□ 1.36
USP48Q86UV5 AC130371.2-201ENST00000619443 611 ntBASIC23.56■■□□□ 1.36
USP48Q86UV5 AC125437.2-201ENST00000625180 2167 ntBASIC23.56■■□□□ 1.36
USP48Q86UV5 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
USP48Q86UV5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
USP48Q86UV5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms