Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 TSPY5P-201ENST00000426936 936 ntBASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 COX11P1-201ENST00000489116 835 ntBASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.35■□□□□ 0.37
RNFT1Q5M7Z0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RNFT1Q5M7Z0 PKD1P6-201ENST00000343738 4769 ntBASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 ZNF815P-204ENST00000434898 1737 ntBASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNFT1Q5M7Z0 KRT8P45-201ENST00000414328 1447 ntBASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 FAM8A6P-201ENST00000407496 1135 ntBASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 PRSS44-201ENST00000515154 1146 ntBASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 MYC-208ENST00000641036 567 ntBASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNFT1Q5M7Z0 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.32■□□□□ 0.36
RNFT1Q5M7Z0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms