Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 AC116562.4-202ENST00000641738 218 ntBASIC18.5■□□□□ 0.55
COL28A1Q2UY09 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL28A1Q2UY09 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 AL845331.1-201ENST00000424978 1190 ntBASIC18.49■□□□□ 0.55
COL28A1Q2UY09 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.49■□□□□ 0.55
COL28A1Q2UY09 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 AP005212.1-201ENST00000581547 1997 ntBASIC18.48■□□□□ 0.55
COL28A1Q2UY09 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.48■□□□□ 0.55
COL28A1Q2UY09 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 VENTXP5-201ENST00000523979 775 ntBASIC18.48■□□□□ 0.55
COL28A1Q2UY09 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.48■□□□□ 0.55
COL28A1Q2UY09 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 AC020907.5-201ENST00000624372 1936 ntBASIC18.47■□□□□ 0.55
COL28A1Q2UY09 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 AC004870.1-201ENST00000315132 882 ntBASIC18.47■□□□□ 0.55
COL28A1Q2UY09 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL28A1Q2UY09 KRT8P45-201ENST00000414328 1447 ntBASIC18.47■□□□□ 0.55
COL28A1Q2UY09 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 AL445675.2-201ENST00000620291 557 ntBASIC18.46■□□□□ 0.55
COL28A1Q2UY09 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL28A1Q2UY09 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms