Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
HSPG2P98160 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC11.97□□□□□ -0.49
HSPG2P98160 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HSPG2P98160 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
HSPG2P98160 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC11.97□□□□□ -0.49
HSPG2P98160 AC091607.1-201ENST00000490318 1060 ntBASIC11.97□□□□□ -0.49
HSPG2P98160 AL160286.2-201ENST00000567150 934 ntBASIC11.97□□□□□ -0.49
HSPG2P98160 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HSPG2P98160 TERC-201ENST00000602385 541 ntBASIC11.97□□□□□ -0.49
HSPG2P98160 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HSPG2P98160 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HSPG2P98160 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HSPG2P98160 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HSPG2P98160 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HSPG2P98160 CALY-203ENST00000368558 825 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC11.96□□□□□ -0.49
HSPG2P98160 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC11.96□□□□□ -0.49
HSPG2P98160 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC11.96□□□□□ -0.49
HSPG2P98160 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC11.96□□□□□ -0.49
HSPG2P98160 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
HSPG2P98160 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HSPG2P98160 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HSPG2P98160 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HSPG2P98160 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 MIR3197-201ENST00000582241 73 ntBASIC11.96□□□□□ -0.49
HSPG2P98160 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC11.96□□□□□ -0.49
HSPG2P98160 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC11.96□□□□□ -0.49
HSPG2P98160 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC11.96□□□□□ -0.5
HSPG2P98160 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
HSPG2P98160 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC11.96□□□□□ -0.5
HSPG2P98160 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC11.96□□□□□ -0.5
HSPG2P98160 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC11.96□□□□□ -0.5
HSPG2P98160 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
HSPG2P98160 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 MED22-202ENST00000371999 987 ntTSL 3 BASIC11.95□□□□□ -0.5
HSPG2P98160 RNF126P1-202ENST00000569893 925 ntBASIC11.95□□□□□ -0.5
HSPG2P98160 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 AC036111.1-201ENST00000533973 1582 ntBASIC11.95□□□□□ -0.5
HSPG2P98160 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 EMD-201ENST00000369835 966 ntTSL 3 BASIC11.95□□□□□ -0.5
HSPG2P98160 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC11.95□□□□□ -0.5
HSPG2P98160 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC11.95□□□□□ -0.5
HSPG2P98160 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC11.95□□□□□ -0.5
HSPG2P98160 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HSPG2P98160 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC11.95□□□□□ -0.5
HSPG2P98160 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 GAD2-202ENST00000376248 680 ntTSL 5 BASIC11.95□□□□□ -0.5
HSPG2P98160 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC11.95□□□□□ -0.5
HSPG2P98160 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC11.95□□□□□ -0.5
HSPG2P98160 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HSPG2P98160 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HSPG2P98160 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 AC098831.1-202ENST00000438821 336 ntBASIC11.94□□□□□ -0.5
HSPG2P98160 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
HSPG2P98160 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HSPG2P98160 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC11.94□□□□□ -0.5
HSPG2P98160 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC11.94□□□□□ -0.5
HSPG2P98160 LBH-204ENST00000406087 559 ntTSL 4 BASIC11.94□□□□□ -0.5
HSPG2P98160 AC005332.3-201ENST00000589904 676 ntBASIC11.94□□□□□ -0.5
HSPG2P98160 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC11.94□□□□□ -0.5
HSPG2P98160 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC11.94□□□□□ -0.5
HSPG2P98160 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HSPG2P98160 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC11.94□□□□□ -0.5
HSPG2P98160 KRT8P11-201ENST00000409686 1436 ntBASIC11.94□□□□□ -0.5
HSPG2P98160 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 CSF3-203ENST00000394148 622 ntTSL 3 BASIC11.94□□□□□ -0.5
HSPG2P98160 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC11.94□□□□□ -0.5
HSPG2P98160 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC11.94□□□□□ -0.5
HSPG2P98160 RPL13AP23-201ENST00000480739 586 ntBASIC11.94□□□□□ -0.5
HSPG2P98160 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 AL049840.3-201ENST00000602669 611 ntBASIC11.94□□□□□ -0.5
HSPG2P98160 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC11.94□□□□□ -0.5
HSPG2P98160 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HSPG2P98160 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC11.93□□□□□ -0.5
HSPG2P98160 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms