Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AP000593.1-201ENST00000393668 712 ntBASIC19.06■□□□□ 0.64
LIMK1P53667 PRELID1P1-202ENST00000567272 903 ntBASIC19.06■□□□□ 0.64
LIMK1P53667 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIMK1P53667 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.06■□□□□ 0.64
LIMK1P53667 HLA-A-209ENST00000638375 975 ntBASIC19.06■□□□□ 0.64
LIMK1P53667 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMK1P53667 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMK1P53667 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMK1P53667 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMK1P53667 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
LIMK1P53667 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMK1P53667 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMK1P53667 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.05■□□□□ 0.64
LIMK1P53667 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMK1P53667 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMK1P53667 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMK1P53667 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.05■□□□□ 0.64
LIMK1P53667 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMK1P53667 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMK1P53667 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMK1P53667 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMK1P53667 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMK1P53667 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 STARP1-201ENST00000397973 869 ntBASIC19.04■□□□□ 0.64
LIMK1P53667 KRT8P45-201ENST00000414328 1447 ntBASIC19.04■□□□□ 0.64
LIMK1P53667 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMK1P53667 HYMAI.1-201ENST00000620949 238 ntBASIC19.04■□□□□ 0.64
LIMK1P53667 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
LIMK1P53667 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMK1P53667 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
LIMK1P53667 AP005212.1-201ENST00000581547 1997 ntBASIC19.04■□□□□ 0.64
LIMK1P53667 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMK1P53667 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.03■□□□□ 0.64
LIMK1P53667 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 AL845331.1-201ENST00000424978 1190 ntBASIC19.03■□□□□ 0.64
LIMK1P53667 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMK1P53667 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 CKBP1-201ENST00000565489 1086 ntBASIC19.03■□□□□ 0.64
LIMK1P53667 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMK1P53667 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.64
LIMK1P53667 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
LIMK1P53667 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMK1P53667 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMK1P53667 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
LIMK1P53667 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMK1P53667 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMK1P53667 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.02■□□□□ 0.63
LIMK1P53667 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms