Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
CNOT4O95628 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.13■□□□□ 0.33
CNOT4O95628 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 FSCN1P1-201ENST00000568912 1481 ntBASIC17.12■□□□□ 0.33
CNOT4O95628 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.12■□□□□ 0.33
CNOT4O95628 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CNOT4O95628 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.12■□□□□ 0.33
CNOT4O95628 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.12■□□□□ 0.33
CNOT4O95628 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.12■□□□□ 0.33
CNOT4O95628 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.12■□□□□ 0.33
CNOT4O95628 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.12■□□□□ 0.33
CNOT4O95628 HLA-A-209ENST00000638375 975 ntBASIC17.12■□□□□ 0.33
CNOT4O95628 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CNOT4O95628 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CNOT4O95628 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.12■□□□□ 0.33
CNOT4O95628 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CNOT4O95628 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CNOT4O95628 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CNOT4O95628 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CNOT4O95628 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.11■□□□□ 0.33
CNOT4O95628 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.11■□□□□ 0.33
CNOT4O95628 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.11■□□□□ 0.33
CNOT4O95628 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.11■□□□□ 0.33
CNOT4O95628 AC097493.4-201ENST00000641197 219 ntBASIC17.11■□□□□ 0.33
CNOT4O95628 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CNOT4O95628 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.11■□□□□ 0.33
CNOT4O95628 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CNOT4O95628 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.1■□□□□ 0.33
CNOT4O95628 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.1■□□□□ 0.33
CNOT4O95628 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 RCN1P1-201ENST00000400413 996 ntBASIC17.1■□□□□ 0.33
CNOT4O95628 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.1■□□□□ 0.33
CNOT4O95628 AC004980.1-204ENST00000429707 299 ntBASIC17.1■□□□□ 0.33
CNOT4O95628 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.1■□□□□ 0.33
CNOT4O95628 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 AL355075.4-201ENST00000554988 638 ntBASIC17.1■□□□□ 0.33
CNOT4O95628 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.1■□□□□ 0.33
CNOT4O95628 DGCR10-201ENST00000609839 495 ntBASIC17.1■□□□□ 0.33
CNOT4O95628 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
CNOT4O95628 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CNOT4O95628 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.1■□□□□ 0.33
CNOT4O95628 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
CNOT4O95628 PCDHAC2-203ENST00000615316 3011 ntBASIC17.1■□□□□ 0.33
CNOT4O95628 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.1■□□□□ 0.33
CNOT4O95628 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNOT4O95628 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms