Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH4O15457 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 CYP2D8P-201ENST00000433633 1490 ntBASIC21.67■■□□□ 1.06
MSH4O15457 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 KRT8P11-201ENST00000409686 1436 ntBASIC21.67■■□□□ 1.06
MSH4O15457 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
MSH4O15457 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.67■■□□□ 1.06
MSH4O15457 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
MSH4O15457 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH4O15457 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.67■■□□□ 1.06
MSH4O15457 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH4O15457 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH4O15457 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH4O15457 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH4O15457 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH4O15457 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
MSH4O15457 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MSH4O15457 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 AC211429.1-201ENST00000415277 523 ntBASIC21.66■■□□□ 1.06
MSH4O15457 MFAP1P1-201ENST00000442257 1255 ntBASIC21.66■■□□□ 1.06
MSH4O15457 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MSH4O15457 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH4O15457 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 AC007952.6-201ENST00000573168 2673 ntBASIC21.66■■□□□ 1.06
MSH4O15457 AC003957.1-201ENST00000625108 2673 ntBASIC21.66■■□□□ 1.06
MSH4O15457 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
MSH4O15457 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
MSH4O15457 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MSH4O15457 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
MSH4O15457 SLC25A24-204ENST00000569674 2357 ntBASIC21.66■■□□□ 1.06
MSH4O15457 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH4O15457 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH4O15457 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH4O15457 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH4O15457 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH4O15457 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH4O15457 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
MSH4O15457 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MSH4O15457 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
MSH4O15457 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH4O15457 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH4O15457 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH4O15457 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
MSH4O15457 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.64■■□□□ 1.06
MSH4O15457 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
MSH4O15457 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH4O15457 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
MSH4O15457 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH4O15457 TSPY23P-201ENST00000440136 739 ntBASIC21.64■■□□□ 1.05
MSH4O15457 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
MSH4O15457 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH4O15457 CKBP1-201ENST00000565489 1086 ntBASIC21.64■■□□□ 1.05
MSH4O15457 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH4O15457 AC010947.1-201ENST00000623454 693 ntBASIC21.64■■□□□ 1.05
MSH4O15457 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH4O15457 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
MSH4O15457 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH4O15457 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH4O15457 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
MSH4O15457 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
MSH4O15457 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH4O15457 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH4O15457 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.63■■□□□ 1.05
MSH4O15457 AC012306.2-201ENST00000609350 630 ntBASIC21.63■■□□□ 1.05
MSH4O15457 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.63■■□□□ 1.05
MSH4O15457 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH4O15457 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms