Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.71■□□□□ 0.59
UBFD1O14562 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UBFD1O14562 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UBFD1O14562 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.71■□□□□ 0.59
UBFD1O14562 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
UBFD1O14562 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.71■□□□□ 0.59
UBFD1O14562 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UBFD1O14562 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UBFD1O14562 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
UBFD1O14562 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.7■□□□□ 0.58
UBFD1O14562 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
UBFD1O14562 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
UBFD1O14562 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.7■□□□□ 0.58
UBFD1O14562 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 AC007613.1-201ENST00000572811 2597 ntBASIC18.7■□□□□ 0.58
UBFD1O14562 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
UBFD1O14562 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.7■□□□□ 0.58
UBFD1O14562 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UBFD1O14562 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
UBFD1O14562 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.69■□□□□ 0.58
UBFD1O14562 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 AC093525.10-201ENST00000625130 1569 ntBASIC18.69■□□□□ 0.58
UBFD1O14562 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
UBFD1O14562 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.69■□□□□ 0.58
UBFD1O14562 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
UBFD1O14562 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.69■□□□□ 0.58
UBFD1O14562 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.69■□□□□ 0.58
UBFD1O14562 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.69■□□□□ 0.58
UBFD1O14562 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.69■□□□□ 0.58
UBFD1O14562 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
UBFD1O14562 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.69■□□□□ 0.58
UBFD1O14562 SOX15-203ENST00000570788 1093 ntBASIC18.69■□□□□ 0.58
UBFD1O14562 AL121829.2-201ENST00000620908 328 ntBASIC18.69■□□□□ 0.58
UBFD1O14562 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
UBFD1O14562 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
UBFD1O14562 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UBFD1O14562 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.68■□□□□ 0.58
UBFD1O14562 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.68■□□□□ 0.58
UBFD1O14562 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 AL512353.2-201ENST00000448759 1962 ntBASIC18.68■□□□□ 0.58
UBFD1O14562 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
UBFD1O14562 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
UBFD1O14562 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UBFD1O14562 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
UBFD1O14562 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
UBFD1O14562 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.68■□□□□ 0.58
UBFD1O14562 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.68■□□□□ 0.58
UBFD1O14562 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms