Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.55■□□□□ 0.56
SLC28A1O00337 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.55■□□□□ 0.56
SLC28A1O00337 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.55■□□□□ 0.56
SLC28A1O00337 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.55■□□□□ 0.56
SLC28A1O00337 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.55■□□□□ 0.56
SLC28A1O00337 SOX15-203ENST00000570788 1093 ntBASIC18.55■□□□□ 0.56
SLC28A1O00337 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SLC28A1O00337 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.55■□□□□ 0.56
SLC28A1O00337 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
SLC28A1O00337 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.55■□□□□ 0.56
SLC28A1O00337 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.54■□□□□ 0.56
SLC28A1O00337 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC28A1O00337 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.54■□□□□ 0.56
SLC28A1O00337 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.54■□□□□ 0.56
SLC28A1O00337 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.54■□□□□ 0.56
SLC28A1O00337 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.54■□□□□ 0.56
SLC28A1O00337 AC133041.1-202ENST00000642053 222 ntBASIC18.54■□□□□ 0.56
SLC28A1O00337 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
SLC28A1O00337 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
SLC28A1O00337 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SLC28A1O00337 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SLC28A1O00337 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 FP475955.4-201ENST00000623131 1990 ntBASIC18.53■□□□□ 0.56
SLC28A1O00337 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.53■□□□□ 0.56
SLC28A1O00337 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SLC28A1O00337 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SLC28A1O00337 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 AC098934.4-201ENST00000564127 592 ntBASIC18.53■□□□□ 0.56
SLC28A1O00337 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.53■□□□□ 0.56
SLC28A1O00337 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.53■□□□□ 0.56
SLC28A1O00337 AL109923.1-201ENST00000618799 583 ntBASIC18.53■□□□□ 0.56
SLC28A1O00337 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SLC28A1O00337 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SLC28A1O00337 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.53■□□□□ 0.56
SLC28A1O00337 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.53■□□□□ 0.56
SLC28A1O00337 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SLC28A1O00337 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SLC28A1O00337 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SLC28A1O00337 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
SLC28A1O00337 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.52■□□□□ 0.56
SLC28A1O00337 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SLC28A1O00337 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.52■□□□□ 0.56
SLC28A1O00337 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SLC28A1O00337 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms