Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 KRT18P67-201ENST00000432816 1264 ntBASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 AP001005.1-201ENST00000571755 1248 ntBASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 AC233723.2-201ENST00000623798 2106 ntBASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 LINC00167-201ENST00000530583 1419 ntBASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 FP700111.2-201ENST00000619190 1892 ntBASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 AL031284.1-201ENST00000419297 478 ntBASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A6A6NMZ7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 AC104819.1-201ENST00000504587 486 ntBASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 TERC-201ENST00000602385 541 ntBASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 LINC00265-3P-201ENST00000447588 903 ntBASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL6A6A6NMZ7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 AC005104.2-201ENST00000427818 678 ntBASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 AL160286.2-201ENST00000567150 934 ntBASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A6A6NMZ7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 MIR662-201ENST00000384847 95 ntBASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 FOSL1P1-201ENST00000511041 816 ntBASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL6A6A6NMZ7 PHGDH-210ENST00000641115 1638 ntBASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms