Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AL032819.2-201ENST00000624543 2162 ntBASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC092865.7-201ENST00000641832 219 ntBASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC25.95■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 KRT126P-201ENST00000549467 1181 ntBASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AL049812.1-201ENST00000432563 2267 ntBASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC012618.2-201ENST00000428058 849 ntBASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC020763.4-201ENST00000623414 4170 ntBASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AC004408.2-201ENST00000623613 2777 ntBASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 AL023875.1-201ENST00000640777 796 ntBASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GOLGA6L3-201ENST00000507199 1679 ntBASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SENP3-EIF4A1A0A087X0R7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms