Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RPL7P24-201ENST00000493052 752 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 SNX5P1-201ENST00000505757 1041 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC112198.4-201ENST00000515450 351 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.84□□□□□ -1.79
TNFRSF4P43489 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC006518.2-201ENST00000542513 940 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.84□□□□□ -1.79
TNFRSF4P43489 CENPUP2-201ENST00000555897 1186 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC126365.2-201ENST00000580630 379 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC007179.3-201ENST00000604976 235 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 AC022079.2-201ENST00000619739 566 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 AL121594.5-201ENST00000631724 573 ntBASIC3.84□□□□□ -1.79
TNFRSF4P43489 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.84□□□□□ -1.79
TNFRSF4P43489 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.84□□□□□ -1.79
TNFRSF4P43489 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.84□□□□□ -1.79
TNFRSF4P43489 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TNFRSF4P43489 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
TNFRSF4P43489 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
TNFRSF4P43489 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.84□□□□□ -1.8
TNFRSF4P43489 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
TNFRSF4P43489 MTND5P28-201ENST00000438005 1594 ntBASIC3.84□□□□□ -1.8
TNFRSF4P43489 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 RNU6-353P-201ENST00000364266 108 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 RNA5SP72-201ENST00000364442 117 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 MIR183-201ENST00000384958 110 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 MIR620-201ENST00000385232 95 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 BTBD10P2-201ENST00000404779 676 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AL354692.1-201ENST00000423044 315 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 PSMA2P3-201ENST00000429685 675 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 RAB11AP1-201ENST00000442978 646 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 RPS26P56-201ENST00000444468 240 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 RPS17P13-201ENST00000448974 407 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 PPIAP3-201ENST00000450588 505 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 PRDX3P4-201ENST00000470828 747 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 S100A11P1-201ENST00000477525 312 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 RN7SL293P-201ENST00000481765 281 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC012170.1-201ENST00000495139 359 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC113430.1-201ENST00000506872 718 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC026726.1-201ENST00000512859 601 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 EIF5A2P1-201ENST00000564027 460 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 MIR4504-201ENST00000577413 92 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 SNORA62.6-201ENST00000606322 83 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AP004247.3-201ENST00000608682 624 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC018645.2-201ENST00000609151 472 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 AP003476.1-201ENST00000623984 516 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 BX649567.1-201ENST00000642071 1134 ntBASIC3.83□□□□□ -1.8
TNFRSF4P43489 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
TNFRSF4P43489 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
TNFRSF4P43489 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 AL049781.1-201ENST00000623195 3585 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.82□□□□□ -1.8
TNFRSF4P43489 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 NMD3P1-201ENST00000439704 1488 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 SGO1P1-201ENST00000603525 1447 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TNFRSF4P43489 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.82□□□□□ -1.8
TNFRSF4P43489 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.82□□□□□ -1.8
TNFRSF4P43489 RNU5B-4P-201ENST00000363508 111 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 MIR218-2-201ENST00000385006 110 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 MIR16-1-201ENST00000385271 89 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.82□□□□□ -1.8
TNFRSF4P43489 ATP5A1P2-201ENST00000412323 255 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 AL024507.1-201ENST00000412741 274 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 OR51A3P-201ENST00000413596 924 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 KRR1P1-201ENST00000419430 803 ntBASIC3.82□□□□□ -1.8
TNFRSF4P43489 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms