Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 RNU6-1066P-201ENST00000363573 105 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 RNA5SP235-201ENST00000365411 114 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 RNA5SP36-201ENST00000410197 133 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 MFSD13B-201ENST00000420133 1290 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 PDSS1P1-201ENST00000422953 1114 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 SDCBPP2-201ENST00000424643 885 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 FO393414.1-201ENST00000428697 1184 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC114755.5-201ENST00000447760 831 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 RPL7P52-201ENST00000449200 742 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 HMGN2P16-201ENST00000456802 261 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 snoU109.4-201ENST00000458953 143 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC010285.1-201ENST00000470580 392 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC109471.1-201ENST00000511631 612 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 SNORA31.9-201ENST00000516429 84 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 snoZ278.1-201ENST00000517059 112 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 SNORA31.20-201ENST00000517111 133 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC019227.1-201ENST00000526902 510 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 SNORD39.3-201ENST00000584451 71 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC068790.5-201ENST00000602741 355 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AL354984.3-201ENST00000604803 325 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 ARF4P1-201ENST00000605447 541 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
CHMP4AQ9BY43 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 ANKRD36P1-201ENST00000344424 659 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 RNU1-15P-201ENST00000353977 144 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 RNA5SP258-201ENST00000362750 119 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 SNORD66.1-201ENST00000391230 76 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 UQCRFS1P3-201ENST00000407697 385 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 FCF1P2-201ENST00000415284 583 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 FNDC3CP-201ENST00000420795 1155 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 CFTRP1-201ENST00000456646 183 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC010469.1-201ENST00000463864 576 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 RNA5SP519-201ENST00000516480 119 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC023632.1-201ENST00000518463 375 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC104417.1-201ENST00000523974 751 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 CYCSP29-201ENST00000533731 318 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC025884.1-201ENST00000556034 378 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AP000238.1-201ENST00000608759 426 ntBASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
CHMP4AQ9BY43 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RNU6-328P-201ENST00000390887 106 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 NRBF2P2-201ENST00000413087 861 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC013262.1-201ENST00000426710 252 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 COX6B1P7-201ENST00000430845 235 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RPEP2-201ENST00000432149 701 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RPL7P19-201ENST00000469948 618 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 RNU6-885P-201ENST00000516607 104 ntBASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.43□□□□□ -1.54
CHMP4AQ9BY43 AC105233.3-201ENST00000531125 744 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms