Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RPL21P110-201ENST00000433345 446 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL500522.2-201ENST00000448562 343 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL096803.2-201ENST00000450032 677 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 RPL32P14-201ENST00000463196 378 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL672167.3-201ENST00000465951 960 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC020898.1-201ENST00000474167 787 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC091959.2-201ENST00000477363 321 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 GAPDHP36-201ENST00000480688 918 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 MTCO2P9-201ENST00000503214 694 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC023824.3-201ENST00000569003 562 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 RN7SL622P-201ENST00000585292 275 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC026741.1-201ENST00000605892 482 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL354760.1-201ENST00000608357 643 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL356118.1-201ENST00000635272 1078 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS35Q96QK1 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AP004289.2-201ENST00000444413 1457 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS35Q96QK1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.81
VPS35Q96QK1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
VPS35Q96QK1 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 OR4A15-201ENST00000314706 1035 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 RNU6-356P-201ENST00000384140 107 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 DSTNP4-201ENST00000399472 474 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 RN7SKP156-201ENST00000410308 342 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 RN7SKP159-201ENST00000410657 292 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 UBE2D3P3-201ENST00000426992 425 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AL513175.1-201ENST00000431492 780 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 HMGB1P45-201ENST00000435986 653 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 HSFY3P-201ENST00000444242 1191 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AL929288.2-201ENST00000446368 407 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC098824.1-201ENST00000453565 980 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 GTF2IP12-201ENST00000456547 356 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 CEACAMP4-201ENST00000457676 421 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC007688.1-201ENST00000475592 759 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 RPS27P23-201ENST00000487608 251 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 PTGES3P3-201ENST00000511479 482 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC026402.1-201ENST00000513642 170 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC010342.1-201ENST00000514047 877 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 RNU6-202P-201ENST00000515998 96 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 Vault.1-201ENST00000516474 102 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 CENPUP2-201ENST00000555897 1186 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC093510.2-201ENST00000562820 896 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 MIR5047-201ENST00000579212 100 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 AC107982.3-201ENST00000584957 985 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 AL390816.3-201ENST00000604527 1066 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 MIR4496-201ENST00000635896 61 ntBASIC3.77□□□□□ -1.81
VPS35Q96QK1 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS35Q96QK1 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS35Q96QK1 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms