Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 Z99127.2-201ENST00000441426 334 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC023512.1-201ENST00000444513 499 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 RPS20P32-201ENST00000456044 356 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 HMGN1P8-201ENST00000463578 288 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC087312.1-201ENST00000471411 480 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 BLNK-209ENST00000495266 440 ntTSL 5 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 RN7SKP18-201ENST00000516005 275 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 PTP4A1P6-201ENST00000531034 478 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC026333.2-201ENST00000542164 106 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 DUXAP6-201ENST00000553858 601 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 CSNK1A1P1-202ENST00000563423 981 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 MIR548Y-201ENST00000582739 110 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 CCDC58P3-201ENST00000590792 430 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 BNIP3P22-201ENST00000593399 556 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC090525.3-201ENST00000605601 189 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 SNORA51-201ENST00000606420 132 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 AC135803.1-201ENST00000608748 565 ntBASIC2.68□□□□□ -1.98
HLA-DMBP28068 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-DMBP28068 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-DMBP28068 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.68□□□□□ -1.98
HLA-DMBP28068 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-DMBP28068 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HLA-DMBP28068 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 FRG1CP-201ENST00000358464 769 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 RNU6-386P-201ENST00000362650 107 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AP002088.1-201ENST00000382740 395 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 MIR7-3-201ENST00000384898 110 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 HMGB3P18-201ENST00000406327 590 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 RN7SKP53-201ENST00000411337 315 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC068533.1-201ENST00000418542 415 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 YME1L1P1-201ENST00000429435 297 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC023347.2-201ENST00000433994 462 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 SETP5-201ENST00000437270 562 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC105402.2-201ENST00000438503 358 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 TXNP6-201ENST00000510190 310 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC010265.1-201ENST00000513509 211 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 RNU2-27P-201ENST00000516185 142 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC026403.1-201ENST00000518938 295 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 OR5D17P-201ENST00000531492 978 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 TRAV37-201ENST00000553906 342 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 TGIF1P1-201ENST00000558095 802 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC024220.1-201ENST00000603675 484 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC069304.3-201ENST00000603938 1084 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC244100.1-202ENST00000621554 382 ntBASIC2.67□□□□□ -1.98
HLA-DMBP28068 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HLA-DMBP28068 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HLA-DMBP28068 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 SNORA71.3-201ENST00000362582 128 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 RNA5SP51-201ENST00000364750 119 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 MIR591-201ENST00000385290 95 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC007066.1-201ENST00000392902 381 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 HMGB1P13-201ENST00000406019 642 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC004987.3-201ENST00000413879 771 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 RPS29P4-201ENST00000414733 161 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms