Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPS4XP22-201ENST00000480755 780 ntBASIC3.12□□□□□ -1.91
COL6A3P12111 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.12□□□□□ -1.91
COL6A3P12111 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.12□□□□□ -1.91
COL6A3P12111 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.11□□□□□ -1.91
COL6A3P12111 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC3.11□□□□□ -1.91
COL6A3P12111 HDGFP1-201ENST00000405943 252 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A3P12111 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A3P12111 OR2B8P-201ENST00000432841 938 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 RPL7P52-201ENST00000449200 742 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.11□□□□□ -1.91
COL6A3P12111 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 EIF1P6-201ENST00000600054 334 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 PRELID3BP8-201ENST00000604148 295 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 AC099506.2-201ENST00000623074 221 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
COL6A3P12111 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A3P12111 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL6A3P12111 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
COL6A3P12111 AC087499.2-201ENST00000432861 149 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 AL513043.1-201ENST00000439124 535 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.11□□□□□ -1.91
COL6A3P12111 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.11□□□□□ -1.91
COL6A3P12111 AC007566.2-201ENST00000603642 413 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 LINC01355-201ENST00000566551 5444 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.11□□□□□ -1.91
COL6A3P12111 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
COL6A3P12111 AC091564.4-201ENST00000533934 2194 ntBASIC3.11□□□□□ -1.91
COL6A3P12111 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.1□□□□□ -1.91
COL6A3P12111 SNORA17.3-201ENST00000391159 129 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 AC111000.2-201ENST00000507775 550 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 AC005798.1-201ENST00000513715 387 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 RNA5SP148-201ENST00000516527 94 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.1□□□□□ -1.91
COL6A3P12111 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.1□□□□□ -1.91
COL6A3P12111 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 RPP40P2-201ENST00000603596 712 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 BRDTP1-201ENST00000605735 677 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 RPL21P6-201ENST00000479171 504 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 AC022509.4-201ENST00000621404 572 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.1□□□□□ -1.91
COL6A3P12111 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 OR10AB1P-202ENST00000641219 1686 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
COL6A3P12111 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
COL6A3P12111 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL6A3P12111 AC073325.2-201ENST00000339545 159 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 AC096638.2-201ENST00000434965 711 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC3.1□□□□□ -1.91
COL6A3P12111 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.1□□□□□ -1.91
COL6A3P12111 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
COL6A3P12111 MIR5047-201ENST00000579212 100 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 AC006840.1-201ENST00000623069 542 ntBASIC3.1□□□□□ -1.91
COL6A3P12111 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL6A3P12111 AC008725.1-201ENST00000605123 2263 ntBASIC3.09□□□□□ -1.91
COL6A3P12111 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
COL6A3P12111 RNU6-1159P-201ENST00000362933 107 ntBASIC3.09□□□□□ -1.91
COL6A3P12111 AL445528.1-201ENST00000426330 420 ntBASIC3.09□□□□□ -1.91
COL6A3P12111 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.09□□□□□ -1.91
COL6A3P12111 AC092436.1-201ENST00000506450 503 ntBASIC3.09□□□□□ -1.91
COL6A3P12111 RNU6-1053P-201ENST00000515930 101 ntBASIC3.09□□□□□ -1.91
COL6A3P12111 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
COL6A3P12111 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.09□□□□□ -1.91
COL6A3P12111 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.09□□□□□ -1.91
COL6A3P12111 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL6A3P12111 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL6A3P12111 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL6A3P12111 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
COL6A3P12111 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL6A3P12111 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.09□□□□□ -1.91
COL6A3P12111 RNA5SP52-201ENST00000362448 134 ntBASIC3.09□□□□□ -1.92
COL6A3P12111 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.09□□□□□ -1.92
COL6A3P12111 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
COL6A3P12111 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.09□□□□□ -1.92
COL6A3P12111 AC012065.2-201ENST00000421295 375 ntBASIC3.09□□□□□ -1.92
COL6A3P12111 NDUFA5P4-201ENST00000436704 385 ntBASIC3.09□□□□□ -1.92
COL6A3P12111 RN7SKP282-201ENST00000516824 299 ntBASIC3.09□□□□□ -1.92
COL6A3P12111 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.09□□□□□ -1.92
COL6A3P12111 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.09□□□□□ -1.92
COL6A3P12111 AC023043.2-201ENST00000589678 1026 ntBASIC3.09□□□□□ -1.92
COL6A3P12111 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
COL6A3P12111 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
COL6A3P12111 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms