Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL121834.1-202ENST00000404494 277 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 RANP4-201ENST00000413361 655 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 AL645937.1-202ENST00000421799 937 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 PRDX3P4-201ENST00000470828 747 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.01□□□□□ -1.77
COL18A1P39060 RNU1-41P-201ENST00000516161 162 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 RNU1-48P-201ENST00000516400 162 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC4.01□□□□□ -1.77
COL18A1P39060 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.01□□□□□ -1.77
COL18A1P39060 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.01□□□□□ -1.77
COL18A1P39060 ELOCP29-201ENST00000588193 334 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 AC007619.2-201ENST00000605743 379 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 AL359535.1-201ENST00000612100 1087 ntBASIC4.01□□□□□ -1.77
COL18A1P39060 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL18A1P39060 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
COL18A1P39060 CD2-201ENST00000369477 478 ntTSL 2 BASIC4□□□□□ -1.77
COL18A1P39060 RN7SKP56-201ENST00000410513 331 ntBASIC4□□□□□ -1.77
COL18A1P39060 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4□□□□□ -1.77
COL18A1P39060 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4□□□□□ -1.77
COL18A1P39060 AL035404.1-201ENST00000497982 568 ntBASIC4□□□□□ -1.77
COL18A1P39060 AC021733.2-201ENST00000518830 497 ntBASIC4□□□□□ -1.77
COL18A1P39060 EIF5A2P1-201ENST00000564027 460 ntBASIC4□□□□□ -1.77
COL18A1P39060 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4□□□□□ -1.77
COL18A1P39060 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL18A1P39060 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4□□□□□ -1.77
COL18A1P39060 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC4□□□□□ -1.77
COL18A1P39060 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL18A1P39060 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
COL18A1P39060 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL18A1P39060 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL18A1P39060 ZNF603P-201ENST00000405613 487 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 MIR1261-201ENST00000408659 82 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.99□□□□□ -1.77
COL18A1P39060 AC013410.1-201ENST00000436223 1232 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 SLC31A1P1-201ENST00000451221 567 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 NPM1P13-201ENST00000452663 865 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 MTCO3P20-201ENST00000454926 688 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 METTL15P1-201ENST00000481421 1045 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.99□□□□□ -1.77
COL18A1P39060 RFPL4AP3-201ENST00000515267 345 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL18A1P39060 AC073869.7-201ENST00000640874 297 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL18A1P39060 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL18A1P39060 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL18A1P39060 BTF3P9-201ENST00000418784 283 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 HMGB3P11-201ENST00000440127 604 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.99□□□□□ -1.77
COL18A1P39060 SUMO2P4-201ENST00000504193 276 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 OR5G4P-201ENST00000525251 760 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.99□□□□□ -1.77
COL18A1P39060 AC067852.4-201ENST00000590314 478 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 AC006272.2-201ENST00000594725 163 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 AL096803.3-201ENST00000609032 532 ntBASIC3.99□□□□□ -1.77
COL18A1P39060 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
COL18A1P39060 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL18A1P39060 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL18A1P39060 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL18A1P39060 BMS1P22-201ENST00000414726 313 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.98□□□□□ -1.77
COL18A1P39060 DUTP6-201ENST00000425573 462 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.98□□□□□ -1.77
COL18A1P39060 ISCA1P2-201ENST00000438679 421 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 AC128713.1-201ENST00000471495 306 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.98□□□□□ -1.77
COL18A1P39060 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC3.98□□□□□ -1.77
COL18A1P39060 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL18A1P39060 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.98□□□□□ -1.77
COL18A1P39060 DPRXP4-201ENST00000578053 568 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.98□□□□□ -1.77
COL18A1P39060 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.98□□□□□ -1.77
COL18A1P39060 IGHVIII-44-202ENST00000636235 289 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.98□□□□□ -1.77
COL18A1P39060 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.98□□□□□ -1.77
COL18A1P39060 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 AC138393.1-206ENST00000540997 1886 ntBASIC3.98□□□□□ -1.77
COL18A1P39060 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL18A1P39060 HSPA8P1-201ENST00000425843 1833 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 RPS4XP5-202ENST00000449995 1334 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AC104446.1-201ENST00000613728 1321 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 RNU6-55P-201ENST00000411092 107 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 RNU6-954P-201ENST00000411355 107 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 RANP7-201ENST00000418085 644 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.97□□□□□ -1.77
COL18A1P39060 AC073069.1-201ENST00000428657 441 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AC022018.1-201ENST00000430685 241 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.97□□□□□ -1.77
COL18A1P39060 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.97□□□□□ -1.77
COL18A1P39060 BX276092.4-201ENST00000452056 248 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 ARL2BPP6-201ENST00000512757 439 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.97□□□□□ -1.77
COL18A1P39060 HMGB1P19-201ENST00000517578 577 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms