Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC1.89□□□□□ -2.11
APOBP04114 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 SAGE4P-201ENST00000442271 3381 ntBASIC1.89□□□□□ -2.11
APOBP04114 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 RN7SKP223-201ENST00000410582 62 ntBASIC1.89□□□□□ -2.11
APOBP04114 TEX41-204ENST00000423031 491 ntTSL 4 BASIC1.89□□□□□ -2.11
APOBP04114 AC005189.1-201ENST00000431286 310 ntBASIC1.89□□□□□ -2.11
APOBP04114 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
APOBP04114 AL513328.1-201ENST00000446460 224 ntBASIC1.89□□□□□ -2.11
APOBP04114 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC1.89□□□□□ -2.11
APOBP04114 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 AL049874.4-201ENST00000557593 255 ntBASIC1.89□□□□□ -2.11
APOBP04114 MIR4738-201ENST00000579134 87 ntBASIC1.89□□□□□ -2.11
APOBP04114 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC1.89□□□□□ -2.11
APOBP04114 AC096947.1-201ENST00000603233 470 ntBASIC1.89□□□□□ -2.11
APOBP04114 AC007619.2-201ENST00000605743 379 ntBASIC1.89□□□□□ -2.11
APOBP04114 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 RN7SKP56-201ENST00000410513 331 ntBASIC1.89□□□□□ -2.11
APOBP04114 SMC4P1-201ENST00000414479 527 ntBASIC1.89□□□□□ -2.11
APOBP04114 AP000873.5-201ENST00000533906 236 ntBASIC1.89□□□□□ -2.11
APOBP04114 LSM1P2-201ENST00000604911 322 ntBASIC1.89□□□□□ -2.11
APOBP04114 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 AC017071.1-201ENST00000564407 2204 ntBASIC1.89□□□□□ -2.11
APOBP04114 RNA5SP68-201ENST00000363885 119 ntBASIC1.89□□□□□ -2.11
APOBP04114 AL136116.1-201ENST00000403591 381 ntBASIC1.89□□□□□ -2.11
APOBP04114 SNRPGP5-201ENST00000456003 220 ntBASIC1.89□□□□□ -2.11
APOBP04114 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 AC114781.4-201ENST00000513707 639 ntBASIC1.89□□□□□ -2.11
APOBP04114 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC1.89□□□□□ -2.11
APOBP04114 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
APOBP04114 AC104446.1-201ENST00000613728 1321 ntBASIC1.89□□□□□ -2.11
APOBP04114 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
APOBP04114 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
APOBP04114 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.88□□□□□ -2.11
APOBP04114 AC126124.2-201ENST00000413542 321 ntBASIC1.88□□□□□ -2.11
APOBP04114 OR2X1P-201ENST00000421144 687 ntBASIC1.88□□□□□ -2.11
APOBP04114 FTH1P6-201ENST00000430768 320 ntBASIC1.88□□□□□ -2.11
APOBP04114 KATNBL1P2-201ENST00000433311 835 ntBASIC1.88□□□□□ -2.11
APOBP04114 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 NECAP1P2-201ENST00000455668 727 ntBASIC1.88□□□□□ -2.11
APOBP04114 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC1.88□□□□□ -2.11
APOBP04114 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC1.88□□□□□ -2.11
APOBP04114 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
APOBP04114 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC1.88□□□□□ -2.11
APOBP04114 MTND5P24-201ENST00000438892 1767 ntBASIC1.88□□□□□ -2.11
APOBP04114 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC1.88□□□□□ -2.11
APOBP04114 ATP5F1P6-201ENST00000402768 767 ntBASIC1.88□□□□□ -2.11
APOBP04114 RNA5SP31-201ENST00000411144 127 ntBASIC1.88□□□□□ -2.11
APOBP04114 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC1.88□□□□□ -2.11
APOBP04114 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC1.88□□□□□ -2.11
APOBP04114 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC1.88□□□□□ -2.11
APOBP04114 WDR61-205ENST00000558459 884 ntTSL 3 BASIC1.88□□□□□ -2.11
APOBP04114 BNIP3P38-201ENST00000601117 544 ntBASIC1.88□□□□□ -2.11
APOBP04114 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 AL158196.1-201ENST00000616786 434 ntBASIC1.88□□□□□ -2.11
APOBP04114 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC1.88□□□□□ -2.11
APOBP04114 AC046144.1-201ENST00000478559 1853 ntBASIC1.88□□□□□ -2.11
APOBP04114 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC1.88□□□□□ -2.11
APOBP04114 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC1.88□□□□□ -2.11
APOBP04114 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC1.88□□□□□ -2.11
APOBP04114 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 SERPINE4P-201ENST00000554978 281 ntBASIC1.88□□□□□ -2.11
APOBP04114 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 GABRG2-229ENST00000641017 3628 ntBASIC1.88□□□□□ -2.11
APOBP04114 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 RPS3AP26-201ENST00000398259 784 ntBASIC1.88□□□□□ -2.11
APOBP04114 ATF1P1-201ENST00000406040 927 ntBASIC1.88□□□□□ -2.11
APOBP04114 HSPE1P8-201ENST00000406997 288 ntBASIC1.88□□□□□ -2.11
APOBP04114 AC010468.1-201ENST00000461022 817 ntBASIC1.88□□□□□ -2.11
APOBP04114 RPS4XP6-201ENST00000477670 797 ntBASIC1.88□□□□□ -2.11
APOBP04114 HMGB3P14-201ENST00000494195 599 ntBASIC1.88□□□□□ -2.11
APOBP04114 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC1.88□□□□□ -2.11
APOBP04114 PRELID3BP8-201ENST00000604148 295 ntBASIC1.88□□□□□ -2.11
APOBP04114 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC1.88□□□□□ -2.11
APOBP04114 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
APOBP04114 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms