Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC105185.1-201ENST00000518705 535 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 CYCSP28-201ENST00000534284 321 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 TOMM20P2-201ENST00000540082 421 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 HIGD1AP17-201ENST00000554576 276 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 TRAV15-201ENST00000556680 249 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AL133507.1-201ENST00000605269 557 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 COX6CP4-201ENST00000605798 228 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AC018638.7-201ENST00000605836 1114 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 MIR6864-201ENST00000617935 70 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AP000843.1-201ENST00000624880 701 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 EOGT-210ENST00000615922 1931 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 CYP1D1P-201ENST00000416662 1433 ntBASIC4.12□□□□□ -1.75
BEST3Q8N1M1 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
BEST3Q8N1M1 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 CDR1-202ENST00000625883 1485 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC008033.1-201ENST00000216407 1162 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 SNORD116-8-201ENST00000384365 95 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 RPS24P12-201ENST00000402084 394 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC004022.2-201ENST00000413824 193 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MTND2P18-201ENST00000419962 1030 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC005345.1-201ENST00000431868 217 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MTCYBP34-201ENST00000439552 670 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 RPS26P56-201ENST00000444468 240 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 RPL7L1P1-201ENST00000448259 785 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 RPL12P26-201ENST00000452430 487 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 ART2BP-201ENST00000453501 499 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AL109741.2-201ENST00000455561 343 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC053481.1-201ENST00000467217 306 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AP000893.1-201ENST00000474462 794 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 SETP14-201ENST00000497538 873 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MRPS33P3-201ENST00000513456 322 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MIR4512-201ENST00000583257 77 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MIR3138-201ENST00000585238 82 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC011477.5-201ENST00000586571 259 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.11□□□□□ -1.75
BEST3Q8N1M1 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
BEST3Q8N1M1 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
BEST3Q8N1M1 SGO1P2-201ENST00000429458 1589 ntBASIC4.1□□□□□ -1.75
BEST3Q8N1M1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
BEST3Q8N1M1 OR5P1P-201ENST00000299512 925 ntBASIC4.1□□□□□ -1.75
BEST3Q8N1M1 Y_RNA.25-201ENST00000362528 102 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms