Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 AL160281.1-201ENST00000605307 311 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC023813.4-201ENST00000607580 580 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC9P31274 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC9P31274 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.82□□□□□ -1.64
HOXC9P31274 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXC9P31274 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXC9P31274 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXC9P31274 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXC9P31274 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 U6.112-201ENST00000384129 70 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 RNU6-298P-201ENST00000390888 96 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AC013404.1-201ENST00000413068 249 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 AC114973.1-201ENST00000429057 632 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AP000936.3-201ENST00000438127 255 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AC004854.1-201ENST00000440356 349 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 RPS4XP6-201ENST00000477670 797 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 AC104687.1-201ENST00000485829 412 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 AC010376.1-201ENST00000522101 334 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.81□□□□□ -1.64
HOXC9P31274 AL121594.4-201ENST00000556211 1196 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC9P31274 MIR5186-201ENST00000577504 120 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 OR2BH1P-201ENST00000608850 864 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 MIR8058-201ENST00000615737 89 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AC022079.2-201ENST00000619739 566 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AC091046.2-201ENST00000620775 665 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
HOXC9P31274 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC9P31274 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 AC026523.2-201ENST00000625039 7739 ntBASIC4.81□□□□□ -1.64
HOXC9P31274 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXC9P31274 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXC9P31274 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC9P31274 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
HOXC9P31274 RNU5B-1-201ENST00000363286 116 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 SNORA62.2-201ENST00000364672 152 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 SNORD17-201ENST00000390930 237 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 RNA5SP120-201ENST00000410900 112 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 HMGB3P31-201ENST00000413333 595 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 HMGB3P20-201ENST00000417997 600 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 SDCBPP2-201ENST00000424643 885 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 MTCO2P23-201ENST00000425216 680 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC9P31274 AC010655.1-201ENST00000449336 292 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 AL591623.2-201ENST00000449978 222 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 FTH1P24-201ENST00000503502 462 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 UBE2V1P12-201ENST00000503954 474 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 snoU109.6-201ENST00000516831 118 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC9P31274 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 NCAPGP2-201ENST00000557911 754 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 AL049838.1-201ENST00000563647 981 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC9P31274 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 AF131215.7-201ENST00000602443 707 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 AL606834.3-201ENST00000602615 496 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 AP002802.2-201ENST00000605877 235 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXC9P31274 AC032011.1-201ENST00000611703 1549 ntBASIC4.8□□□□□ -1.64
HOXC9P31274 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC9P31274 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXC9P31274 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXC9P31274 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC9P31274 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC9P31274 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC9P31274 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HOXC9P31274 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC9P31274 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC9P31274 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms