Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL6A3P12111 RNA5SP213-201ENST00000391031 106 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 DYNLL1P7-201ENST00000429273 258 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 RPL21P99-201ENST00000480369 423 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
COL6A3P12111 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.18□□□□□ -1.9
COL6A3P12111 AC093524.1-201ENST00000564266 1094 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.18□□□□□ -1.9
COL6A3P12111 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC3.18□□□□□ -1.9
COL6A3P12111 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.18□□□□□ -1.9
COL6A3P12111 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 RPL31P13-201ENST00000484151 370 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.18□□□□□ -1.9
COL6A3P12111 RAD21-204ENST00000518055 896 ntTSL 2 BASIC3.18□□□□□ -1.9
COL6A3P12111 AC005261.6-201ENST00000623072 1387 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 AC108206.1-201ENST00000570186 4159 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A3P12111 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A3P12111 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A3P12111 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.17□□□□□ -1.9
COL6A3P12111 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.17□□□□□ -1.9
COL6A3P12111 SEC11B-201ENST00000518383 499 ntBASIC3.17□□□□□ -1.9
COL6A3P12111 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.17□□□□□ -1.9
COL6A3P12111 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A3P12111 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
COL6A3P12111 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
COL6A3P12111 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL6A3P12111 AC016696.1-201ENST00000446949 318 ntBASIC3.17□□□□□ -1.9
COL6A3P12111 SNRPGP5-201ENST00000456003 220 ntBASIC3.17□□□□□ -1.9
COL6A3P12111 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC3.17□□□□□ -1.9
COL6A3P12111 AC012603.1-201ENST00000606424 528 ntBASIC3.17□□□□□ -1.9
COL6A3P12111 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC3.17□□□□□ -1.9
COL6A3P12111 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL6A3P12111 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A3P12111 RNU6-76P-201ENST00000384060 104 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 SNORD15B-201ENST00000384714 146 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 MIR518E-201ENST00000385252 88 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC3.16□□□□□ -1.9
COL6A3P12111 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
COL6A3P12111 HMGB3P22-202ENST00000451823 572 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.16□□□□□ -1.9
COL6A3P12111 RN7SKP209-201ENST00000516888 304 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.16□□□□□ -1.9
COL6A3P12111 AP001646.1-201ENST00000527936 915 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.16□□□□□ -1.9
COL6A3P12111 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC3.16□□□□□ -1.9
COL6A3P12111 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
COL6A3P12111 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.16□□□□□ -1.9
COL6A3P12111 RPL7L1P1-201ENST00000448259 785 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.16□□□□□ -1.9
COL6A3P12111 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 NF1P10-201ENST00000613227 742 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.16□□□□□ -1.9
COL6A3P12111 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.16□□□□□ -1.9
COL6A3P12111 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
COL6A3P12111 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC3.16□□□□□ -1.9
COL6A3P12111 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 AC022031.1-201ENST00000585985 2593 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
COL6A3P12111 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
COL6A3P12111 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A3P12111 ELOCP23-201ENST00000452014 332 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.16□□□□□ -1.9
COL6A3P12111 SERPINE4P-201ENST00000554978 281 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.16□□□□□ -1.9
COL6A3P12111 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.16□□□□□ -1.9
COL6A3P12111 SNORD39.4-201ENST00000620099 78 ntBASIC3.16□□□□□ -1.9
COL6A3P12111 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.15□□□□□ -1.9
COL6A3P12111 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
COL6A3P12111 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
COL6A3P12111 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
COL6A3P12111 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
COL6A3P12111 DNAJC19P1-201ENST00000455312 319 ntBASIC3.15□□□□□ -1.9
COL6A3P12111 AP000867.2-201ENST00000532468 320 ntBASIC3.15□□□□□ -1.9
COL6A3P12111 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.15□□□□□ -1.9
COL6A3P12111 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.15□□□□□ -1.9
COL6A3P12111 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.15□□□□□ -1.9
COL6A3P12111 AC026979.4-201ENST00000606555 645 ntBASIC3.15□□□□□ -1.9
COL6A3P12111 AL513302.2-201ENST00000562313 1842 ntBASIC3.15□□□□□ -1.91
COL6A3P12111 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.15□□□□□ -1.91
COL6A3P12111 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.15□□□□□ -1.91
COL6A3P12111 MIR7154-201ENST00000620673 73 ntBASIC3.15□□□□□ -1.91
COL6A3P12111 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC3.15□□□□□ -1.91
COL6A3P12111 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL6A3P12111 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms