Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC011944.2-201ENST00000624440 683 ntBASIC4.34□□□□□ -1.71
PCDH9Q9HC56 AC092608.3-201ENST00000625017 386 ntBASIC4.34□□□□□ -1.71
PCDH9Q9HC56 MFSD8-245ENST00000641743 948 ntBASIC4.34□□□□□ -1.71
PCDH9Q9HC56 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
PCDH9Q9HC56 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDH9Q9HC56 AL158163.1-201ENST00000603915 1649 ntBASIC4.34□□□□□ -1.71
PCDH9Q9HC56 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDH9Q9HC56 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
PCDH9Q9HC56 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
PCDH9Q9HC56 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.72
PCDH9Q9HC56 AC007390.2-201ENST00000606229 3803 ntBASIC4.34□□□□□ -1.72
PCDH9Q9HC56 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
PCDH9Q9HC56 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC018529.3-201ENST00000624212 2254 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC119751.3-201ENST00000399720 670 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 SFR1P1-201ENST00000403720 688 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 RNU4-25P-201ENST00000410569 230 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 P2RY10P2-201ENST00000416730 913 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 MFSD13B-201ENST00000420133 1290 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 MTND5P25-201ENST00000430499 799 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 MTCO3P21-201ENST00000430791 643 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 RPS24P8-201ENST00000431490 402 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 PRELID3BP7-201ENST00000503606 469 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AL592156.1-201ENST00000508758 304 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 OSBPL9P5-201ENST00000542581 171 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 BNIP3P24-201ENST00000593398 557 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AP003392.5-201ENST00000607857 415 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AP000255.1-201ENST00000610276 676 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC105227.2-201ENST00000615075 605 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC233309.1-201ENST00000619522 751 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 AC068254.2-201ENST00000623938 3577 ntBASIC4.33□□□□□ -1.72
PCDH9Q9HC56 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PCDH9Q9HC56 MAPK10-253ENST00000641010 4072 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 GSTA8P-201ENST00000404253 637 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AL603766.1-201ENST00000407763 664 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 RNA5SP39-201ENST00000411245 120 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC107081.1-201ENST00000414975 361 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AL009174.1-201ENST00000426577 416 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 RPL21P110-201ENST00000433345 446 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC073143.1-201ENST00000436316 395 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 ACTR3P2-201ENST00000439585 1257 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 YWHAQP9-201ENST00000445891 512 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 HMGB1P16-201ENST00000447155 540 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC005229.2-201ENST00000456995 399 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 RPS29P19-201ENST00000479709 171 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 RPL35P6-201ENST00000490024 372 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC010486.2-201ENST00000505572 483 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC118282.2-201ENST00000508739 374 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 FABP5P12-201ENST00000515543 389 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 EMP1-206ENST00000537612 505 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDH9Q9HC56 DUXAP6-201ENST00000553858 601 ntBASIC4.32□□□□□ -1.72
PCDH9Q9HC56 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms