Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.61□□□□□ -1.83
COL4A4P53420 MTND1P26-201ENST00000440488 538 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 AC112198.1-201ENST00000505369 1220 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 ASNSP4-201ENST00000511103 447 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 AC091826.1-201ENST00000514065 313 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 MTND1P36-201ENST00000522384 936 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 TRAV11-201ENST00000539512 339 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.61□□□□□ -1.83
COL4A4P53420 AL158062.1-201ENST00000619632 745 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 AL353684.1-201ENST00000622677 1120 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.61□□□□□ -1.83
COL4A4P53420 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.61□□□□□ -1.83
COL4A4P53420 TNPO1P3-201ENST00000436471 2662 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 SCN1A-220ENST00000641603 12506 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.61□□□□□ -1.83
COL4A4P53420 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A4P53420 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.6□□□□□ -1.83
COL4A4P53420 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 AC097634.1-201ENST00000604491 2467 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A4P53420 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A4P53420 AL022311.1-201ENST00000623726 19416 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 AC062016.1-201ENST00000355719 319 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 RNU6-7-201ENST00000364784 107 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 RNU6-8-201ENST00000365467 107 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
COL4A4P53420 AL136116.1-201ENST00000403591 381 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.6□□□□□ -1.83
COL4A4P53420 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.6□□□□□ -1.83
COL4A4P53420 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.6□□□□□ -1.83
COL4A4P53420 ARL2BPP6-201ENST00000512757 439 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 APOOP4-201ENST00000513530 597 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 AC112206.4-201ENST00000515142 405 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 AC026801.2-201ENST00000515352 425 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.6□□□□□ -1.83
COL4A4P53420 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 AC092868.3-201ENST00000560515 784 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 RPL21P136-201ENST00000605378 396 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 AL158196.1-201ENST00000616786 434 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 HSPA8P17-201ENST00000427029 1382 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A4P53420 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
COL4A4P53420 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A4P53420 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL4A4P53420 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 OR5AQ1P-203ENST00000641818 1529 ntBASIC3.6□□□□□ -1.83
COL4A4P53420 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
COL4A4P53420 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.59□□□□□ -1.83
COL4A4P53420 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 SNORA54-201ENST00000384281 123 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A4P53420 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.59□□□□□ -1.83
COL4A4P53420 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A4P53420 AC009263.1-201ENST00000441193 1239 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.59□□□□□ -1.83
COL4A4P53420 MTND2P3-201ENST00000452458 470 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.59□□□□□ -1.83
COL4A4P53420 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A4P53420 AL133477.1-201ENST00000457472 514 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.59□□□□□ -1.83
COL4A4P53420 OR52A4P-202ENST00000481634 799 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 OR52A4P-203ENST00000498233 1014 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 AC110794.1-201ENST00000505816 425 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.59□□□□□ -1.83
COL4A4P53420 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A4P53420 EIF4EP5-201ENST00000528228 640 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.59□□□□□ -1.83
COL4A4P53420 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.59□□□□□ -1.83
COL4A4P53420 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.59□□□□□ -1.83
COL4A4P53420 AL731537.2-201ENST00000561565 951 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 SNORD39.4-201ENST00000620099 78 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
COL4A4P53420 NMD3P1-201ENST00000439704 1488 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
COL4A4P53420 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
COL4A4P53420 AC007496.3-201ENST00000624987 3443 ntBASIC3.59□□□□□ -1.83
COL4A4P53420 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.59□□□□□ -1.83
COL4A4P53420 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL4A4P53420 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A4P53420 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A4P53420 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A4P53420 RN7SKP56-201ENST00000410513 331 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 AL353678.1-201ENST00000422735 741 ntBASIC3.59□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms