Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC5.59□□□□□ -1.51
CHMP4AQ9BY43 AC006927.2-201ENST00000639256 389 ntBASIC5.59□□□□□ -1.51
CHMP4AQ9BY43 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CHMP4AQ9BY43 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CHMP4AQ9BY43 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP4AQ9BY43 AP001148.1-201ENST00000624124 2359 ntBASIC5.59□□□□□ -1.51
CHMP4AQ9BY43 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 OR4A15-201ENST00000314706 1035 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 RNU6-761P-201ENST00000384148 107 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 SNRPFP1-201ENST00000414761 252 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AL139095.3-201ENST00000419672 1203 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 SFR1P2-201ENST00000421841 730 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 MTCO2P1-201ENST00000424648 477 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 VDAC1P6-201ENST00000430062 855 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 VDAC1P3-201ENST00000434069 851 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC000041.1-201ENST00000439655 175 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC109327.1-201ENST00000471666 403 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 UQCRHP4-201ENST00000471686 272 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC016550.1-201ENST00000505348 785 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC091860.1-201ENST00000505723 432 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC138701.1-201ENST00000524329 714 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 MIR3690-201ENST00000580266 75 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 MLECP1-201ENST00000615893 709 ntBASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CHMP4AQ9BY43 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AF127577.6-201ENST00000623352 2191 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC130650.2-201ENST00000618736 2403 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 RNU6-600P-201ENST00000362524 99 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 RNA5SP295-201ENST00000362655 121 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 OR1L1-202ENST00000373686 1083 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 LAP3P1-201ENST00000403648 294 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 RPL21P66-201ENST00000426566 466 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC104073.1-201ENST00000451988 151 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 NPM1P13-201ENST00000452663 865 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 RPS24P6-201ENST00000452670 400 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 FABP3P2-201ENST00000453169 399 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC010618.1-201ENST00000469924 477 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC010301.1-201ENST00000473936 355 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC090013.1-201ENST00000485147 480 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC026979.1-201ENST00000492525 396 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 KCTD9P2-201ENST00000512203 1013 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 IGKV2D-36-201ENST00000518643 226 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 SNORD84-203ENST00000584275 78 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 Z98200.1-201ENST00000607298 470 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 SNX18P1Y-201ENST00000616231 511 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 MIR6830-201ENST00000636015 70 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 FP325313.1-201ENST00000638228 703 ntBASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CHMP4AQ9BY43 AC017104.4-201ENST00000636283 1592 ntBASIC5.56□□□□□ -1.52
CHMP4AQ9BY43 HMGB1P5-201ENST00000255320 642 ntBASIC5.56□□□□□ -1.52
CHMP4AQ9BY43 SNORA63.3-201ENST00000362682 132 ntBASIC5.56□□□□□ -1.52
CHMP4AQ9BY43 RNU6-839P-201ENST00000363347 108 ntBASIC5.56□□□□□ -1.52
CHMP4AQ9BY43 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP4AQ9BY43 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.56□□□□□ -1.52
CHMP4AQ9BY43 Y_RNA.493-201ENST00000384422 102 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms