Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC1.45□□□□□ -2.18
USH2AO75445 SARNP-203ENST00000552080 726 ntTSL 2 BASIC1.45□□□□□ -2.18
USH2AO75445 UBL5P2-201ENST00000583788 219 ntBASIC1.45□□□□□ -2.18
USH2AO75445 AL354760.1-201ENST00000608357 643 ntBASIC1.45□□□□□ -2.18
USH2AO75445 AC095038.3-201ENST00000634439 195 ntBASIC1.45□□□□□ -2.18
USH2AO75445 AC046144.1-201ENST00000478559 1853 ntBASIC1.45□□□□□ -2.18
USH2AO75445 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
USH2AO75445 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
USH2AO75445 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC1.45□□□□□ -2.18
USH2AO75445 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC1.45□□□□□ -2.18
USH2AO75445 HMGB3P12-201ENST00000438745 556 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC1.44□□□□□ -2.18
USH2AO75445 NPM1P17-201ENST00000479221 602 ntBASIC1.44□□□□□ -2.18
USH2AO75445 HMGB1P3-201ENST00000502802 616 ntBASIC1.44□□□□□ -2.18
USH2AO75445 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC1.44□□□□□ -2.18
USH2AO75445 AC026801.2-201ENST00000515352 425 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 FAM35BP-202ENST00000497389 3337 ntBASIC1.44□□□□□ -2.18
USH2AO75445 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 YES1-203ENST00000577961 4554 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 AC105402.1-201ENST00000413336 545 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AC073335.1-201ENST00000427776 363 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AL513043.1-201ENST00000439124 535 ntBASIC1.44□□□□□ -2.18
USH2AO75445 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 RNF148-202ENST00000447240 839 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 RPL23AP67-201ENST00000465341 474 ntBASIC1.44□□□□□ -2.18
USH2AO75445 METTL15P1-201ENST00000481421 1045 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AP001646.1-201ENST00000527936 915 ntBASIC1.44□□□□□ -2.18
USH2AO75445 DUXAP6-201ENST00000553858 601 ntBASIC1.44□□□□□ -2.18
USH2AO75445 MIR4648-201ENST00000580107 72 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AP003117.2-201ENST00000606010 545 ntBASIC1.44□□□□□ -2.18
USH2AO75445 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 RPS4XP5-202ENST00000449995 1334 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AC139713.2-215ENST00000641428 5037 ntBASIC1.44□□□□□ -2.18
USH2AO75445 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 AC091564.4-201ENST00000533934 2194 ntBASIC1.44□□□□□ -2.18
USH2AO75445 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 NDUFA5P4-201ENST00000436704 385 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.44□□□□□ -2.18
USH2AO75445 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 LYZ-203ENST00000549690 669 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 LSM3P2-201ENST00000551246 273 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC1.44□□□□□ -2.18
USH2AO75445 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 AL773545.4-201ENST00000637262 310 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AL513478.4-201ENST00000641636 310 ntBASIC1.44□□□□□ -2.18
USH2AO75445 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC1.44□□□□□ -2.18
USH2AO75445 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 AC068724.1-201ENST00000487100 792 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 AC025554.1-201ENST00000505641 188 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC1.44□□□□□ -2.18
USH2AO75445 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC1.44□□□□□ -2.18
USH2AO75445 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 RPP40P2-201ENST00000603596 712 ntBASIC1.44□□□□□ -2.18
USH2AO75445 AC026634.1-201ENST00000634369 198 ntBASIC1.44□□□□□ -2.18
USH2AO75445 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC1.44□□□□□ -2.18
USH2AO75445 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
USH2AO75445 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
USH2AO75445 AC067945.1-201ENST00000342609 618 ntBASIC1.43□□□□□ -2.18
USH2AO75445 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
USH2AO75445 AC016696.1-201ENST00000446949 318 ntBASIC1.43□□□□□ -2.18
USH2AO75445 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC1.43□□□□□ -2.18
USH2AO75445 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC1.43□□□□□ -2.18
USH2AO75445 MRPS21P9-201ENST00000571150 257 ntBASIC1.43□□□□□ -2.18
USH2AO75445 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC1.43□□□□□ -2.18
USH2AO75445 AC091905.1-201ENST00000624400 311 ntBASIC1.43□□□□□ -2.18
USH2AO75445 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC1.43□□□□□ -2.18
USH2AO75445 SYT14P1-202ENST00000600441 1448 ntBASIC1.43□□□□□ -2.18
USH2AO75445 AC005539.1-201ENST00000443768 1479 ntBASIC1.43□□□□□ -2.18
USH2AO75445 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
USH2AO75445 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
USH2AO75445 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms