Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC025647.1-201ENST00000517879 253 ntBASIC10.5□□□□□ -0.73
MSH5O43196 AP006587.5-201ENST00000532033 739 ntBASIC10.5□□□□□ -0.73
MSH5O43196 SSU72P6-201ENST00000532644 488 ntBASIC10.5□□□□□ -0.73
MSH5O43196 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC10.5□□□□□ -0.73
MSH5O43196 AC138749.2-201ENST00000566048 167 ntBASIC10.5□□□□□ -0.73
MSH5O43196 MIR4642-201ENST00000583943 82 ntBASIC10.5□□□□□ -0.73
MSH5O43196 AL158151.4-201ENST00000600965 507 ntBASIC10.5□□□□□ -0.73
MSH5O43196 Metazoa_SRP.27-201ENST00000617573 258 ntBASIC10.5□□□□□ -0.73
MSH5O43196 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC10.5□□□□□ -0.73
MSH5O43196 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC10.5□□□□□ -0.73
MSH5O43196 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC10.5□□□□□ -0.73
MSH5O43196 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC10.5□□□□□ -0.73
MSH5O43196 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 ESRP1-203ENST00000433389 3770 ntAPPRIS P4 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC10.5□□□□□ -0.73
MSH5O43196 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 KCNMB3P1-202ENST00000493696 3389 ntBASIC10.49□□□□□ -0.73
MSH5O43196 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC10.49□□□□□ -0.73
MSH5O43196 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
MSH5O43196 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC10.49□□□□□ -0.73
MSH5O43196 U3.35-201ENST00000408405 208 ntBASIC10.49□□□□□ -0.73
MSH5O43196 RN7SKP117-201ENST00000410175 264 ntBASIC10.49□□□□□ -0.73
MSH5O43196 RN7SKP251-201ENST00000410830 314 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC000362.1-201ENST00000433725 425 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC099670.2-201ENST00000435130 321 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC10.49□□□□□ -0.73
MSH5O43196 AL445991.1-201ENST00000450381 475 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC10.49□□□□□ -0.73
MSH5O43196 RPS26P45-201ENST00000471748 340 ntBASIC10.49□□□□□ -0.73
MSH5O43196 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC10.49□□□□□ -0.73
MSH5O43196 SCARNA8-201ENST00000515924 131 ntBASIC10.49□□□□□ -0.73
MSH5O43196 RN7SKP289-201ENST00000517244 295 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC10.49□□□□□ -0.73
MSH5O43196 RNF185-AS1-201ENST00000526089 353 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC073913.2-201ENST00000541512 145 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC005176.2-201ENST00000596933 147 ntBASIC10.49□□□□□ -0.73
MSH5O43196 AC025166.1-201ENST00000612411 163 ntBASIC10.49□□□□□ -0.73
MSH5O43196 CASC19-228ENST00000641414 1684 ntBASIC10.49□□□□□ -0.73
MSH5O43196 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
MSH5O43196 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
MSH5O43196 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
MSH5O43196 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC10.49□□□□□ -0.73
MSH5O43196 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC10.49□□□□□ -0.73
MSH5O43196 GTF3C3-201ENST00000263956 4282 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
MSH5O43196 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
MSH5O43196 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 CACNB4-250ENST00000637418 2015 ntTSL 5 BASIC10.48□□□□□ -0.73
MSH5O43196 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC10.48□□□□□ -0.73
MSH5O43196 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 Y_RNA.17-201ENST00000362433 111 ntBASIC10.48□□□□□ -0.73
MSH5O43196 RNA5SP463-201ENST00000363030 120 ntBASIC10.48□□□□□ -0.73
MSH5O43196 RNA5SP378-201ENST00000363646 120 ntBASIC10.48□□□□□ -0.73
MSH5O43196 RNU6-1082P-201ENST00000364574 107 ntBASIC10.48□□□□□ -0.73
MSH5O43196 RNU6-242P-201ENST00000384359 107 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AL034374.1-201ENST00000406329 351 ntBASIC10.48□□□□□ -0.73
MSH5O43196 RNU6-516P-201ENST00000411381 104 ntBASIC10.48□□□□□ -0.73
MSH5O43196 SNX18P13-201ENST00000412442 529 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC10.48□□□□□ -0.73
MSH5O43196 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC10.48□□□□□ -0.73
MSH5O43196 RN7SL228P-201ENST00000470060 303 ntBASIC10.48□□□□□ -0.73
MSH5O43196 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC10.48□□□□□ -0.73
MSH5O43196 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC10.48□□□□□ -0.73
MSH5O43196 RN7SL416P-201ENST00000494042 298 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC10.48□□□□□ -0.73
MSH5O43196 AC091839.1-201ENST00000513087 269 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC10.48□□□□□ -0.73
MSH5O43196 AC104057.1-201ENST00000515547 497 ntBASIC10.48□□□□□ -0.73
MSH5O43196 IGLV10-67-201ENST00000519446 325 ntBASIC10.48□□□□□ -0.73
MSH5O43196 IGHVIII-11-1-201ENST00000522733 267 ntBASIC10.48□□□□□ -0.73
MSH5O43196 MIR2052HG-204ENST00000523442 550 ntTSL 4 BASIC10.48□□□□□ -0.73
MSH5O43196 SNHG19-201ENST00000563192 342 ntTSL 2 BASIC10.48□□□□□ -0.73
MSH5O43196 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC10.48□□□□□ -0.73
MSH5O43196 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC10.48□□□□□ -0.73
MSH5O43196 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC10.48□□□□□ -0.73
MSH5O43196 RPS11-202ENST00000594493 575 ntTSL 3 BASIC10.48□□□□□ -0.73
MSH5O43196 AL391813.1-201ENST00000603098 260 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC010632.3-201ENST00000611377 369 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC103564.3-201ENST00000621194 220 ntBASIC10.48□□□□□ -0.73
MSH5O43196 HBG1-202ENST00000632727 369 ntTSL 3 BASIC10.48□□□□□ -0.73
MSH5O43196 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
MSH5O43196 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 AC245505.2-201ENST00000553572 3055 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC10.48□□□□□ -0.73
MSH5O43196 AC108099.1-201ENST00000564402 3258 ntBASIC10.48□□□□□ -0.73
MSH5O43196 PTGS2-201ENST00000367468 4514 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
MSH5O43196 AC010329.5-201ENST00000623497 2174 ntBASIC10.48□□□□□ -0.73
MSH5O43196 AC016930.1-201ENST00000468766 2205 ntBASIC10.48□□□□□ -0.73
MSH5O43196 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC10.48□□□□□ -0.73
MSH5O43196 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
MSH5O43196 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 439.8 ms