Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RNU6-193P-201ENST00000410977 107 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 FAM183DP-201ENST00000421987 399 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC005094.1-201ENST00000440420 368 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 TPT1P13-201ENST00000449760 499 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AL118520.1-201ENST00000450770 291 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC233279.1-201ENST00000455300 423 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RN7SL741P-201ENST00000482473 289 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MTND6P8-201ENST00000503471 522 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC112484.3-201ENST00000505910 329 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 KHDC1P1-201ENST00000511053 508 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 SNORD116-26-201ENST00000516006 96 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 SNORA74.1-201ENST00000516320 180 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RNU6-1038P-201ENST00000516516 104 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AP005435.4-201ENST00000529514 284 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC026464.5-201ENST00000562497 722 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC138207.8-204ENST00000579588 527 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MIR4742-201ENST00000581069 85 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MIR4293-201ENST00000584305 78 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AL022394.1-201ENST00000606979 292 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC093838.1-201ENST00000613014 469 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AP004289.2-201ENST00000444413 1457 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 IARS-213ENST00000627121 4587 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC011493.1-201ENST00000596753 1632 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC004972.1-201ENST00000623934 2209 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 MTND4P14-201ENST00000435799 1354 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 LCN1P2-201ENST00000372030 223 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 RNU6-38P-201ENST00000384085 107 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 SNORA70E-201ENST00000384492 135 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 SNORA68.2-201ENST00000391263 128 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 RPL23AP38-201ENST00000423801 469 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC018644.1-201ENST00000429934 551 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 CKS1BP5-201ENST00000434172 273 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 ELOCP18-201ENST00000434209 337 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC094019.1-201ENST00000434678 472 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 POU5F1P5-201ENST00000445059 658 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 RPL23AP43-201ENST00000446445 471 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms