Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CUX1P39880 AC017071.1-201ENST00000564407 2204 ntBASIC5.37□□□□□ -1.55
CUX1P39880 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CUX1P39880 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CUX1P39880 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.36□□□□□ -1.55
CUX1P39880 AC004552.1-201ENST00000419089 348 ntBASIC5.36□□□□□ -1.55
CUX1P39880 AC069540.1-201ENST00000446320 988 ntBASIC5.36□□□□□ -1.55
CUX1P39880 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.36□□□□□ -1.55
CUX1P39880 AP002404.1-201ENST00000532005 451 ntBASIC5.36□□□□□ -1.55
CUX1P39880 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.36□□□□□ -1.55
CUX1P39880 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.36□□□□□ -1.55
CUX1P39880 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC5.36□□□□□ -1.55
CUX1P39880 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.36□□□□□ -1.55
CUX1P39880 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC5.36□□□□□ -1.55
CUX1P39880 AC015849.2-201ENST00000605738 409 ntBASIC5.36□□□□□ -1.55
CUX1P39880 AC013412.1-201ENST00000610687 192 ntBASIC5.36□□□□□ -1.55
CUX1P39880 AL451142.2-201ENST00000429076 2090 ntBASIC5.36□□□□□ -1.55
CUX1P39880 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CUX1P39880 AC087190.4-201ENST00000574616 8334 ntBASIC5.36□□□□□ -1.55
CUX1P39880 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.36□□□□□ -1.55
CUX1P39880 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CUX1P39880 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CUX1P39880 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.35□□□□□ -1.55
CUX1P39880 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC5.35□□□□□ -1.55
CUX1P39880 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC5.35□□□□□ -1.55
CUX1P39880 SNORD67-201ENST00000390833 111 ntBASIC5.35□□□□□ -1.55
CUX1P39880 REREP1Y-201ENST00000422655 198 ntBASIC5.35□□□□□ -1.55
CUX1P39880 SETP5-201ENST00000437270 562 ntBASIC5.35□□□□□ -1.55
CUX1P39880 REREP2Y-201ENST00000439103 200 ntBASIC5.35□□□□□ -1.55
CUX1P39880 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.35□□□□□ -1.55
CUX1P39880 AC087312.1-201ENST00000471411 480 ntBASIC5.35□□□□□ -1.55
CUX1P39880 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.35□□□□□ -1.55
CUX1P39880 ACTG1P13-201ENST00000486987 1043 ntBASIC5.35□□□□□ -1.55
CUX1P39880 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.35□□□□□ -1.55
CUX1P39880 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.35□□□□□ -1.55
CUX1P39880 AC026801.2-201ENST00000515352 425 ntBASIC5.35□□□□□ -1.55
CUX1P39880 RN7SKP132-201ENST00000516001 208 ntBASIC5.35□□□□□ -1.55
CUX1P39880 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.35□□□□□ -1.55
CUX1P39880 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CUX1P39880 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CUX1P39880 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CUX1P39880 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
CUX1P39880 ZNF90P1-201ENST00000480493 1951 ntBASIC5.35□□□□□ -1.55
CUX1P39880 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.35□□□□□ -1.55
CUX1P39880 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CUX1P39880 OR5J1P-201ENST00000313544 939 ntBASIC5.34□□□□□ -1.55
CUX1P39880 HMGB3P18-201ENST00000406327 590 ntBASIC5.34□□□□□ -1.55
CUX1P39880 RN7SKP220-201ENST00000410611 288 ntBASIC5.34□□□□□ -1.55
CUX1P39880 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.34□□□□□ -1.55
CUX1P39880 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC5.34□□□□□ -1.55
CUX1P39880 AC105272.1-201ENST00000438604 198 ntBASIC5.34□□□□□ -1.55
CUX1P39880 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.34□□□□□ -1.55
CUX1P39880 ELOCP23-201ENST00000452014 332 ntBASIC5.34□□□□□ -1.55
CUX1P39880 RPL23AP71-201ENST00000470966 469 ntBASIC5.34□□□□□ -1.55
CUX1P39880 RN7SKP116-201ENST00000516902 319 ntBASIC5.34□□□□□ -1.55
CUX1P39880 AP000859.1-201ENST00000525536 307 ntBASIC5.34□□□□□ -1.55
CUX1P39880 AC015917.1-201ENST00000579654 510 ntBASIC5.34□□□□□ -1.55
CUX1P39880 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.34□□□□□ -1.55
CUX1P39880 MIR4727-201ENST00000622232 55 ntBASIC5.34□□□□□ -1.55
CUX1P39880 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CUX1P39880 AC017007.4-201ENST00000503353 1352 ntBASIC5.34□□□□□ -1.55
CUX1P39880 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CUX1P39880 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
CUX1P39880 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.33□□□□□ -1.56
CUX1P39880 AC021205.2-201ENST00000480069 347 ntBASIC5.33□□□□□ -1.56
CUX1P39880 OR2A20P-203ENST00000498397 1268 ntBASIC5.33□□□□□ -1.56
CUX1P39880 AC245100.7-201ENST00000609678 442 ntBASIC5.33□□□□□ -1.56
CUX1P39880 AC063952.1-203ENST00000634410 658 ntBASIC5.33□□□□□ -1.56
CUX1P39880 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CUX1P39880 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC5.33□□□□□ -1.56
CUX1P39880 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CUX1P39880 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
CUX1P39880 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CUX1P39880 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
CUX1P39880 RIOK3P1-201ENST00000418778 1528 ntBASIC5.33□□□□□ -1.56
CUX1P39880 AL391417.1-201ENST00000404100 426 ntBASIC5.33□□□□□ -1.56
CUX1P39880 MTND2P11-201ENST00000423638 648 ntBASIC5.33□□□□□ -1.56
CUX1P39880 ETF1P3-201ENST00000430422 1160 ntBASIC5.33□□□□□ -1.56
CUX1P39880 KATNBL1P2-201ENST00000433311 835 ntBASIC5.33□□□□□ -1.56
CUX1P39880 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC5.33□□□□□ -1.56
CUX1P39880 DNAJC19P1-201ENST00000455312 319 ntBASIC5.33□□□□□ -1.56
CUX1P39880 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC5.33□□□□□ -1.56
CUX1P39880 AC027309.2-201ENST00000520566 192 ntBASIC5.33□□□□□ -1.56
CUX1P39880 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.33□□□□□ -1.56
CUX1P39880 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
CUX1P39880 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CUX1P39880 AL136116.1-201ENST00000403591 381 ntBASIC5.32□□□□□ -1.56
CUX1P39880 EEF1A1P41-201ENST00000414667 207 ntBASIC5.32□□□□□ -1.56
CUX1P39880 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.32□□□□□ -1.56
CUX1P39880 HMGB3P9-201ENST00000441799 583 ntBASIC5.32□□□□□ -1.56
CUX1P39880 AC016696.1-201ENST00000446949 318 ntBASIC5.32□□□□□ -1.56
CUX1P39880 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CUX1P39880 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC5.32□□□□□ -1.56
CUX1P39880 AC068724.1-201ENST00000487100 792 ntBASIC5.32□□□□□ -1.56
CUX1P39880 AC010486.1-201ENST00000511793 424 ntBASIC5.32□□□□□ -1.56
CUX1P39880 AC107934.2-201ENST00000518653 310 ntBASIC5.32□□□□□ -1.56
CUX1P39880 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.32□□□□□ -1.56
CUX1P39880 PRELID3BP8-201ENST00000604148 295 ntBASIC5.32□□□□□ -1.56
CUX1P39880 CEP170P1-201ENST00000502249 4587 ntBASIC5.32□□□□□ -1.56
CUX1P39880 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms