Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
MSH5O43196 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC10.53□□□□□ -0.72
MSH5O43196 AC007996.1-201ENST00000620414 2821 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AC007126.1-201ENST00000508202 4781 ntBASIC10.52□□□□□ -0.72
MSH5O43196 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
MSH5O43196 SPATA31A3-201ENST00000428649 4256 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 SPATA31A5-201ENST00000437823 4256 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC10.52□□□□□ -0.73
MSH5O43196 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC10.52□□□□□ -0.73
MSH5O43196 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC10.52□□□□□ -0.73
MSH5O43196 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 Y_RNA.85-201ENST00000363014 111 ntBASIC10.52□□□□□ -0.73
MSH5O43196 RNA5SP197-201ENST00000363357 119 ntBASIC10.52□□□□□ -0.73
MSH5O43196 Y_RNA.324-201ENST00000365165 102 ntBASIC10.52□□□□□ -0.73
MSH5O43196 RNU6-1113P-201ENST00000384348 107 ntBASIC10.52□□□□□ -0.73
MSH5O43196 RNU6-24P-201ENST00000384440 107 ntBASIC10.52□□□□□ -0.73
MSH5O43196 AL138479.1-201ENST00000426913 484 ntBASIC10.52□□□□□ -0.73
MSH5O43196 AC005042.3-201ENST00000453230 174 ntBASIC10.52□□□□□ -0.73
MSH5O43196 RN7SL308P-201ENST00000464971 297 ntBASIC10.52□□□□□ -0.73
MSH5O43196 AC107385.1-201ENST00000507985 778 ntBASIC10.52□□□□□ -0.73
MSH5O43196 AC106774.2-201ENST00000510266 406 ntBASIC10.52□□□□□ -0.73
MSH5O43196 AC044860.3-201ENST00000559957 368 ntBASIC10.52□□□□□ -0.73
MSH5O43196 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 CDRT1-208ENST00000630868 794 ntBASIC10.52□□□□□ -0.73
MSH5O43196 AC138915.1-201ENST00000565427 1685 ntBASIC10.52□□□□□ -0.73
MSH5O43196 GCSAM-201ENST00000308910 3336 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
MSH5O43196 ZNF611-203ENST00000540744 4417 ntAPPRIS P1 TSL 4 BASIC10.52□□□□□ -0.73
MSH5O43196 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
MSH5O43196 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC10.52□□□□□ -0.73
MSH5O43196 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
MSH5O43196 CTAGE3P-201ENST00000454280 2404 ntBASIC10.52□□□□□ -0.73
MSH5O43196 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC10.51□□□□□ -0.73
MSH5O43196 AC006600.2-201ENST00000624834 2506 ntBASIC10.51□□□□□ -0.73
MSH5O43196 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC10.51□□□□□ -0.73
MSH5O43196 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC10.51□□□□□ -0.73
MSH5O43196 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
MSH5O43196 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC10.51□□□□□ -0.73
MSH5O43196 THNSL1-202ENST00000524413 3788 ntAPPRIS P1 TSL 3 BASIC10.51□□□□□ -0.73
MSH5O43196 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
MSH5O43196 MIR595-201ENST00000384905 96 ntBASIC10.51□□□□□ -0.73
MSH5O43196 MIR15B-201ENST00000385045 98 ntBASIC10.51□□□□□ -0.73
MSH5O43196 SNORD86-201ENST00000391196 86 ntBASIC10.51□□□□□ -0.73
MSH5O43196 RN7SKP222-201ENST00000410651 315 ntBASIC10.51□□□□□ -0.73
MSH5O43196 Y_RNA.617-201ENST00000410920 90 ntBASIC10.51□□□□□ -0.73
MSH5O43196 AL158156.1-201ENST00000422509 473 ntBASIC10.51□□□□□ -0.73
MSH5O43196 GAPDHP57-201ENST00000424400 585 ntBASIC10.51□□□□□ -0.73
MSH5O43196 AC126120.1-201ENST00000431082 470 ntBASIC10.51□□□□□ -0.73
MSH5O43196 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC10.51□□□□□ -0.73
MSH5O43196 AC124916.1-201ENST00000444020 547 ntBASIC10.51□□□□□ -0.73
MSH5O43196 RN7SL706P-201ENST00000460079 292 ntBASIC10.51□□□□□ -0.73
MSH5O43196 AC109454.1-201ENST00000471205 498 ntBASIC10.51□□□□□ -0.73
MSH5O43196 IGHVIII-82-201ENST00000522058 250 ntBASIC10.51□□□□□ -0.73
MSH5O43196 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC10.51□□□□□ -0.73
MSH5O43196 MIR7973-1-201ENST00000614683 76 ntBASIC10.51□□□□□ -0.73
MSH5O43196 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC10.51□□□□□ -0.73
MSH5O43196 AC099667.1-201ENST00000624222 469 ntBASIC10.51□□□□□ -0.73
MSH5O43196 NOTCH2-207ENST00000602566 5046 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 CTD-2201I18.1-202ENST00000514042 2705 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
MSH5O43196 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 GLI1-201ENST00000228682 3613 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
MSH5O43196 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
MSH5O43196 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC10.51□□□□□ -0.73
MSH5O43196 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
MSH5O43196 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
MSH5O43196 PIWIL3-201ENST00000332271 3504 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC10.5□□□□□ -0.73
MSH5O43196 AC090983.1-201ENST00000623426 3897 ntBASIC10.5□□□□□ -0.73
MSH5O43196 AL512662.1-201ENST00000624850 2251 ntBASIC10.5□□□□□ -0.73
MSH5O43196 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC10.5□□□□□ -0.73
MSH5O43196 AC132219.2-201ENST00000624416 2327 ntBASIC10.5□□□□□ -0.73
MSH5O43196 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC10.5□□□□□ -0.73
MSH5O43196 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 KIDINS220-202ENST00000319688 3765 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
MSH5O43196 RNU4-10P-201ENST00000364383 140 ntBASIC10.5□□□□□ -0.73
MSH5O43196 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
MSH5O43196 AL592291.1-201ENST00000403830 352 ntBASIC10.5□□□□□ -0.73
MSH5O43196 PPP1R11P2-201ENST00000423543 382 ntBASIC10.5□□□□□ -0.73
MSH5O43196 COX6B1P7-201ENST00000430845 235 ntBASIC10.5□□□□□ -0.73
MSH5O43196 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC10.5□□□□□ -0.73
MSH5O43196 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC10.5□□□□□ -0.73
MSH5O43196 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC10.5□□□□□ -0.73
MSH5O43196 AC010409.2-201ENST00000505780 478 ntBASIC10.5□□□□□ -0.73
MSH5O43196 RN7SKP19-201ENST00000516016 252 ntBASIC10.5□□□□□ -0.73
MSH5O43196 RNA5SP287-201ENST00000516358 103 ntBASIC10.5□□□□□ -0.73
MSH5O43196 RNA5SP281-201ENST00000516504 135 ntBASIC10.5□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 152.6 ms