Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.26□□□□□ -1.73
COL18A1P39060 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.26□□□□□ -1.73
COL18A1P39060 AC239809.1-201ENST00000450470 217 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 HMGB1P5-202ENST00000451497 985 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 AC068724.1-201ENST00000487100 792 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.26□□□□□ -1.73
COL18A1P39060 AC010486.1-201ENST00000511793 424 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 AC022080.3-201ENST00000544433 482 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.26□□□□□ -1.73
COL18A1P39060 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.26□□□□□ -1.73
COL18A1P39060 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
COL18A1P39060 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
COL18A1P39060 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.26□□□□□ -1.73
COL18A1P39060 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.25□□□□□ -1.73
COL18A1P39060 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL18A1P39060 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL18A1P39060 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL18A1P39060 SKP1P1-201ENST00000438081 489 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 AC105272.1-201ENST00000438604 198 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL18A1P39060 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.25□□□□□ -1.73
COL18A1P39060 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.25□□□□□ -1.73
COL18A1P39060 RN7SKP132-201ENST00000516001 208 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.25□□□□□ -1.73
COL18A1P39060 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.25□□□□□ -1.73
COL18A1P39060 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL18A1P39060 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
COL18A1P39060 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.25□□□□□ -1.73
COL18A1P39060 CR381670.1-201ENST00000624291 1693 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL18A1P39060 MIR449A-201ENST00000362113 91 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 ARF4P3-201ENST00000397387 509 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 RPL5P18-201ENST00000406671 891 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 AC005002.1-201ENST00000447458 540 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 AC008264.1-201ENST00000447612 367 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.25□□□□□ -1.73
COL18A1P39060 RPL37P4-201ENST00000448908 268 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 ACTG1P13-201ENST00000486987 1043 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
COL18A1P39060 MYL12AP1-201ENST00000518490 515 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 RPL12P22-201ENST00000519073 490 ntBASIC4.25□□□□□ -1.73
COL18A1P39060 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.25□□□□□ -1.73
COL18A1P39060 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.24□□□□□ -1.73
COL18A1P39060 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
COL18A1P39060 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.24□□□□□ -1.73
COL18A1P39060 AL136116.1-201ENST00000403591 381 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 MTND2P11-201ENST00000423638 648 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 HSPE1P16-201ENST00000426640 348 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.24□□□□□ -1.73
COL18A1P39060 GTF3AP2-201ENST00000557014 266 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 AC011270.1-201ENST00000558606 583 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 RPL12P50-201ENST00000603116 116 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 AC015849.2-201ENST00000605738 409 ntBASIC4.24□□□□□ -1.73
COL18A1P39060 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
COL18A1P39060 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
COL18A1P39060 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL18A1P39060 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL18A1P39060 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.23□□□□□ -1.73
COL18A1P39060 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
COL18A1P39060 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
COL18A1P39060 AL031595.2-201ENST00000624215 19071 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL18A1P39060 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.23□□□□□ -1.73
COL18A1P39060 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.23□□□□□ -1.73
COL18A1P39060 AL135938.1-201ENST00000443141 297 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.23□□□□□ -1.73
COL18A1P39060 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.23□□□□□ -1.73
COL18A1P39060 VN1R104P-201ENST00000505115 1009 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 AL590240.3-201ENST00000621416 943 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 NCAPGP1-201ENST00000505112 1814 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
COL18A1P39060 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.23□□□□□ -1.73
COL18A1P39060 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
COL18A1P39060 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL18A1P39060 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL18A1P39060 OR4G1P-202ENST00000641173 1788 ntBASIC4.23□□□□□ -1.73
COL18A1P39060 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL18A1P39060 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL18A1P39060 FTLP6-201ENST00000355274 422 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms