Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 RCN1P1-201ENST00000400413 996 ntBASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 GOLGA6L3-201ENST00000507199 1679 ntBASIC22.19■■□□□ 1.14
DDX41Q9UJV9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AC116562.4-201ENST00000641316 2276 ntBASIC22.19■■□□□ 1.14
DDX41Q9UJV9 AP000974.1-201ENST00000623909 2387 ntBASIC22.19■■□□□ 1.14
DDX41Q9UJV9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX41Q9UJV9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 MIR1224-201ENST00000408193 85 ntBASIC22.18■■□□□ 1.14
DDX41Q9UJV9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.18■■□□□ 1.14
DDX41Q9UJV9 PPOX-219ENST00000544598 813 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 AL445675.2-201ENST00000620291 557 ntBASIC22.18■■□□□ 1.14
DDX41Q9UJV9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX41Q9UJV9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 MIR1238-201ENST00000408483 83 ntBASIC22.17■■□□□ 1.14
DDX41Q9UJV9 TUBB8P6-201ENST00000436895 1288 ntBASIC22.17■■□□□ 1.14
DDX41Q9UJV9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.17■■□□□ 1.14
DDX41Q9UJV9 AL031985.4-201ENST00000642138 673 ntBASIC22.17■■□□□ 1.14
DDX41Q9UJV9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
DDX41Q9UJV9 AC112907.3-201ENST00000577781 2400 ntBASIC22.17■■□□□ 1.14
DDX41Q9UJV9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX41Q9UJV9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 MESTP1-201ENST00000404287 994 ntBASIC22.15■■□□□ 1.14
DDX41Q9UJV9 AL390955.1-201ENST00000428694 934 ntBASIC22.15■■□□□ 1.14
DDX41Q9UJV9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 FITM1-202ENST00000559294 800 ntBASIC22.15■■□□□ 1.14
DDX41Q9UJV9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 AC145285.6-201ENST00000604632 637 ntBASIC22.15■■□□□ 1.14
DDX41Q9UJV9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX41Q9UJV9 BX119927.1-201ENST00000636596 1552 ntBASIC22.15■■□□□ 1.14
DDX41Q9UJV9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms