Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CNTN3Q9P232 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CNTN3Q9P232 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CNTN3Q9P232 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.81■□□□□ 0.92
CNTN3Q9P232 AC007952.6-201ENST00000573168 2673 ntBASIC20.81■□□□□ 0.92
CNTN3Q9P232 AC003957.1-201ENST00000625108 2673 ntBASIC20.81■□□□□ 0.92
CNTN3Q9P232 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CNTN3Q9P232 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNTN3Q9P232 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CNTN3Q9P232 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNTN3Q9P232 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 FAM210CP-201ENST00000445714 574 ntBASIC20.8■□□□□ 0.92
CNTN3Q9P232 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 EGLN1P1-201ENST00000531623 762 ntBASIC20.8■□□□□ 0.92
CNTN3Q9P232 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.8■□□□□ 0.92
CNTN3Q9P232 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNTN3Q9P232 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNTN3Q9P232 KRT18P22-201ENST00000402024 1347 ntBASIC20.79■□□□□ 0.92
CNTN3Q9P232 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CNTN3Q9P232 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CNTN3Q9P232 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CNTN3Q9P232 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CNTN3Q9P232 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.79■□□□□ 0.92
CNTN3Q9P232 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.78■□□□□ 0.92
CNTN3Q9P232 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 CKBP1-201ENST00000565489 1086 ntBASIC20.78■□□□□ 0.92
CNTN3Q9P232 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNTN3Q9P232 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
CNTN3Q9P232 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CNTN3Q9P232 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNTN3Q9P232 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNTN3Q9P232 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNTN3Q9P232 RCN1P1-201ENST00000400413 996 ntBASIC20.77■□□□□ 0.92
CNTN3Q9P232 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CNTN3Q9P232 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNTN3Q9P232 KRT8P11-201ENST00000409686 1436 ntBASIC20.77■□□□□ 0.91
CNTN3Q9P232 SDHAP1-207ENST00000440850 2000 ntBASIC20.77■□□□□ 0.91
CNTN3Q9P232 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNTN3Q9P232 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNTN3Q9P232 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CNTN3Q9P232 PCDHAC2-203ENST00000615316 3011 ntBASIC20.76■□□□□ 0.91
CNTN3Q9P232 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNTN3Q9P232 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNTN3Q9P232 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 PRSS44-201ENST00000515154 1146 ntBASIC20.76■□□□□ 0.91
CNTN3Q9P232 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.76■□□□□ 0.91
CNTN3Q9P232 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNTN3Q9P232 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms