Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Z85996.1-201ENST00000494644 937 ntBASIC18.3■□□□□ 0.52
SCN3AQ9NY46 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 C2orf69P3-201ENST00000565542 1120 ntBASIC18.3■□□□□ 0.52
SCN3AQ9NY46 AL160286.2-201ENST00000567150 934 ntBASIC18.3■□□□□ 0.52
SCN3AQ9NY46 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 KRT8P41-201ENST00000533985 1514 ntBASIC18.3■□□□□ 0.52
SCN3AQ9NY46 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SCN3AQ9NY46 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 RCC2P6-201ENST00000526625 1557 ntBASIC18.29■□□□□ 0.52
SCN3AQ9NY46 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 SDHAP1-207ENST00000440850 2000 ntBASIC18.29■□□□□ 0.52
SCN3AQ9NY46 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 MIR4785-201ENST00000585005 73 ntBASIC18.29■□□□□ 0.52
SCN3AQ9NY46 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.29■□□□□ 0.52
SCN3AQ9NY46 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN3AQ9NY46 AL032819.2-201ENST00000624543 2162 ntBASIC18.28■□□□□ 0.52
SCN3AQ9NY46 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 AC026271.3-201ENST00000571884 352 ntBASIC18.28■□□□□ 0.52
SCN3AQ9NY46 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.28■□□□□ 0.52
SCN3AQ9NY46 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 TSPY15P-201ENST00000457163 923 ntBASIC18.28■□□□□ 0.52
SCN3AQ9NY46 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN3AQ9NY46 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 AC131212.4-201ENST00000623606 975 ntBASIC18.27■□□□□ 0.52
SCN3AQ9NY46 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SCN3AQ9NY46 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.27■□□□□ 0.51
SCN3AQ9NY46 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 KRT17P2-201ENST00000300992 1314 ntBASIC18.26■□□□□ 0.51
SCN3AQ9NY46 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.26■□□□□ 0.51
SCN3AQ9NY46 AC079598.2-202ENST00000546624 1451 ntBASIC18.26■□□□□ 0.51
SCN3AQ9NY46 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms