Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.94■□□□□ 0.3
LIME1Q9H400 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.94■□□□□ 0.3
LIME1Q9H400 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LIME1Q9H400 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.94■□□□□ 0.3
LIME1Q9H400 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LIME1Q9H400 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LIME1Q9H400 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LIME1Q9H400 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
LIME1Q9H400 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
LIME1Q9H400 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.93■□□□□ 0.3
LIME1Q9H400 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.93■□□□□ 0.3
LIME1Q9H400 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.93■□□□□ 0.3
LIME1Q9H400 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 AC022616.7-201ENST00000525383 220 ntBASIC16.93■□□□□ 0.3
LIME1Q9H400 EGLN1P1-201ENST00000531623 762 ntBASIC16.93■□□□□ 0.3
LIME1Q9H400 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.93■□□□□ 0.3
LIME1Q9H400 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIME1Q9H400 FSCN1P1-201ENST00000568912 1481 ntBASIC16.93■□□□□ 0.3
LIME1Q9H400 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 PTBP1P-201ENST00000554374 1601 ntBASIC16.92■□□□□ 0.3
LIME1Q9H400 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
LIME1Q9H400 AL020996.1-203ENST00000536896 2307 ntBASIC16.92■□□□□ 0.3
LIME1Q9H400 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.92■□□□□ 0.3
LIME1Q9H400 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.92■□□□□ 0.3
LIME1Q9H400 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.92■□□□□ 0.3
LIME1Q9H400 CRYGFP-201ENST00000418459 633 ntBASIC16.92■□□□□ 0.3
LIME1Q9H400 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.92■□□□□ 0.3
LIME1Q9H400 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.92■□□□□ 0.3
LIME1Q9H400 AC011506.1-201ENST00000474329 610 ntBASIC16.92■□□□□ 0.3
LIME1Q9H400 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
LIME1Q9H400 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.92■□□□□ 0.3
LIME1Q9H400 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.92■□□□□ 0.3
LIME1Q9H400 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIME1Q9H400 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.91■□□□□ 0.3
LIME1Q9H400 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
LIME1Q9H400 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIME1Q9H400 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 TSPY14P-201ENST00000303979 915 ntBASIC16.91■□□□□ 0.3
LIME1Q9H400 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 HLA-G-202ENST00000376815 851 ntBASIC16.91■□□□□ 0.3
LIME1Q9H400 HLA-G-203ENST00000376818 1127 ntBASIC16.91■□□□□ 0.3
LIME1Q9H400 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.91■□□□□ 0.3
LIME1Q9H400 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.91■□□□□ 0.3
LIME1Q9H400 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.91■□□□□ 0.3
LIME1Q9H400 B3GAT3P1-201ENST00000471720 806 ntBASIC16.91■□□□□ 0.3
LIME1Q9H400 AC063952.2-201ENST00000498792 1227 ntBASIC16.91■□□□□ 0.3
LIME1Q9H400 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
LIME1Q9H400 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.91■□□□□ 0.3
LIME1Q9H400 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.91■□□□□ 0.3
LIME1Q9H400 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.91■□□□□ 0.3
LIME1Q9H400 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms