Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 USP9YP14-201ENST00000430663 563 ntBASIC21.32■■□□□ 1
RNF39Q9H2S5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC21.32■■□□□ 1
RNF39Q9H2S5 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.32■■□□□ 1
RNF39Q9H2S5 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNF39Q9H2S5 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNF39Q9H2S5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
RNF39Q9H2S5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 KRT16P1-201ENST00000399124 1418 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 AL162377.1-201ENST00000618844 1793 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.31■■□□□ 1
RNF39Q9H2S5 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.31■■□□□ 1
RNF39Q9H2S5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.31■■□□□ 1
RNF39Q9H2S5 PYM1-202ENST00000398213 1073 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 HLA-DPB2-205ENST00000435074 1188 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 AC012454.1-201ENST00000443948 995 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 RFC3P1-201ENST00000454568 682 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AC012213.3-201ENST00000577199 777 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.31■■□□□ 1
RNF39Q9H2S5 AC114878.2-201ENST00000604863 1251 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 AP000525.1-201ENST00000608286 694 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 AC012306.2-201ENST00000609350 630 ntBASIC21.31■■□□□ 1
RNF39Q9H2S5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNF39Q9H2S5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.31■■□□□ 1
RNF39Q9H2S5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 KRT8P9-201ENST00000558927 1449 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.3■■□□□ 1
RNF39Q9H2S5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.3■■□□□ 1
RNF39Q9H2S5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 RNU4-40P-201ENST00000364351 143 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC21.3■■□□□ 1
RNF39Q9H2S5 TUBB8P6-201ENST00000436895 1288 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AC116562.2-201ENST00000507042 360 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 ATOX1-206ENST00000522710 591 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AC126365.2-201ENST00000580630 379 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.3■■□□□ 1
RNF39Q9H2S5 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.3■■□□□ 1
RNF39Q9H2S5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 AC091057.3-201ENST00000602684 733 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.3■■□□□ 1
RNF39Q9H2S5 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF39Q9H2S5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.29■■□□□ 1
RNF39Q9H2S5 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 AL691432.2-201ENST00000607222 2038 ntBASIC21.29■■□□□ 1
RNF39Q9H2S5 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 MMP23A-201ENST00000234610 1017 ntBASIC21.29■■□□□ 1
RNF39Q9H2S5 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.29■■□□□ 1
RNF39Q9H2S5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 AC108729.2-201ENST00000476543 840 ntBASIC21.29■■□□□ 1
RNF39Q9H2S5 HGNC:18790-207ENST00000505246 973 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RNF39Q9H2S5 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC21.29■■□□□ 1
RNF39Q9H2S5 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC21.29■■□□□ 1
RNF39Q9H2S5 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RNF39Q9H2S5 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.29■■□□□ 1
RNF39Q9H2S5 AC097493.4-201ENST00000641197 219 ntBASIC21.29■■□□□ 1
RNF39Q9H2S5 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF39Q9H2S5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms