Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS1Q99742 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
NPAS1Q99742 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.59■□□□□ 0.41
NPAS1Q99742 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.59■□□□□ 0.41
NPAS1Q99742 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.59■□□□□ 0.41
NPAS1Q99742 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.59■□□□□ 0.41
NPAS1Q99742 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
NPAS1Q99742 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
NPAS1Q99742 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
NPAS1Q99742 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.59■□□□□ 0.41
NPAS1Q99742 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.59■□□□□ 0.41
NPAS1Q99742 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NPAS1Q99742 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.58■□□□□ 0.41
NPAS1Q99742 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.58■□□□□ 0.41
NPAS1Q99742 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NPAS1Q99742 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.58■□□□□ 0.41
NPAS1Q99742 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
NPAS1Q99742 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
NPAS1Q99742 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NPAS1Q99742 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.58■□□□□ 0.4
NPAS1Q99742 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.58■□□□□ 0.4
NPAS1Q99742 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
NPAS1Q99742 RPS2P55-201ENST00000397318 883 ntBASIC17.58■□□□□ 0.4
NPAS1Q99742 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.58■□□□□ 0.4
NPAS1Q99742 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 AC107956.1-201ENST00000494359 873 ntBASIC17.58■□□□□ 0.4
NPAS1Q99742 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NPAS1Q99742 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NPAS1Q99742 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.58■□□□□ 0.4
NPAS1Q99742 AC113410.3-201ENST00000623366 203 ntBASIC17.58■□□□□ 0.4
NPAS1Q99742 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NPAS1Q99742 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NPAS1Q99742 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
NPAS1Q99742 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NPAS1Q99742 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
NPAS1Q99742 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.58■□□□□ 0.4
NPAS1Q99742 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 SDHAP1-207ENST00000440850 2000 ntBASIC17.57■□□□□ 0.4
NPAS1Q99742 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.57■□□□□ 0.4
NPAS1Q99742 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
NPAS1Q99742 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.57■□□□□ 0.4
NPAS1Q99742 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.57■□□□□ 0.4
NPAS1Q99742 AC093827.2-201ENST00000512654 315 ntBASIC17.57■□□□□ 0.4
NPAS1Q99742 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
NPAS1Q99742 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.57■□□□□ 0.4
NPAS1Q99742 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NPAS1Q99742 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
NPAS1Q99742 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 AC104417.2-201ENST00000562989 1793 ntBASIC17.56■□□□□ 0.4
NPAS1Q99742 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
NPAS1Q99742 ZNF815P-204ENST00000434898 1737 ntBASIC17.56■□□□□ 0.4
NPAS1Q99742 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
NPAS1Q99742 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
NPAS1Q99742 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.56■□□□□ 0.4
NPAS1Q99742 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.56■□□□□ 0.4
NPAS1Q99742 NIFKP9-201ENST00000419265 221 ntBASIC17.56■□□□□ 0.4
NPAS1Q99742 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NPAS1Q99742 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.56■□□□□ 0.4
NPAS1Q99742 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms