Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CDX2Q99626 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CDX2Q99626 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 KRT18P67-201ENST00000432816 1264 ntBASIC20.24■□□□□ 0.83
CDX2Q99626 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.24■□□□□ 0.83
CDX2Q99626 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CDX2Q99626 AL136038.4-201ENST00000603606 1261 ntBASIC20.24■□□□□ 0.83
CDX2Q99626 AC148477.8-201ENST00000624298 468 ntBASIC20.24■□□□□ 0.83
CDX2Q99626 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.24■□□□□ 0.83
CDX2Q99626 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX2Q99626 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.24■□□□□ 0.83
CDX2Q99626 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
CDX2Q99626 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CDX2Q99626 ZNF259P1-201ENST00000407656 1365 ntBASIC20.23■□□□□ 0.83
CDX2Q99626 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CDX2Q99626 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.23■□□□□ 0.83
CDX2Q99626 RPS8P6-201ENST00000426177 609 ntBASIC20.23■□□□□ 0.83
CDX2Q99626 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.23■□□□□ 0.83
CDX2Q99626 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.23■□□□□ 0.83
CDX2Q99626 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.23■□□□□ 0.83
CDX2Q99626 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 AC090616.6-201ENST00000582640 721 ntBASIC20.23■□□□□ 0.83
CDX2Q99626 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.23■□□□□ 0.83
CDX2Q99626 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX2Q99626 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.22■□□□□ 0.83
CDX2Q99626 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.22■□□□□ 0.83
CDX2Q99626 AL391807.1-203ENST00000604392 2365 ntBASIC20.22■□□□□ 0.83
CDX2Q99626 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
CDX2Q99626 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 AC244107.1-201ENST00000442033 332 ntBASIC20.22■□□□□ 0.83
CDX2Q99626 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CDX2Q99626 AF186996.4-201ENST00000467186 377 ntBASIC20.22■□□□□ 0.83
CDX2Q99626 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.22■□□□□ 0.83
CDX2Q99626 Z69720.1-201ENST00000601483 472 ntBASIC20.22■□□□□ 0.83
CDX2Q99626 IGHV3-41-201ENST00000613121 348 ntBASIC20.22■□□□□ 0.83
CDX2Q99626 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX2Q99626 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CDX2Q99626 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CDX2Q99626 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 UPF3AP3-201ENST00000420996 769 ntBASIC20.21■□□□□ 0.83
CDX2Q99626 IGHV3-47-201ENST00000425060 335 ntBASIC20.21■□□□□ 0.83
CDX2Q99626 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.21■□□□□ 0.83
CDX2Q99626 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CDX2Q99626 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX2Q99626 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.21■□□□□ 0.83
CDX2Q99626 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.21■□□□□ 0.83
CDX2Q99626 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX2Q99626 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.21■□□□□ 0.83
CDX2Q99626 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX2Q99626 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX2Q99626 Z83836.1-201ENST00000624605 1642 ntBASIC20.2■□□□□ 0.82
CDX2Q99626 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX2Q99626 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX2Q99626 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX2Q99626 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX2Q99626 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDX2Q99626 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.2■□□□□ 0.82
CDX2Q99626 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.2■□□□□ 0.82
CDX2Q99626 PGAM5P1-201ENST00000518923 814 ntBASIC20.2■□□□□ 0.82
CDX2Q99626 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX2Q99626 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX2Q99626 AL157888.1-201ENST00000631930 593 ntBASIC20.2■□□□□ 0.82
CDX2Q99626 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
CDX2Q99626 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX2Q99626 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
CDX2Q99626 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX2Q99626 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CDX2Q99626 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX2Q99626 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX2Q99626 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX2Q99626 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.19■□□□□ 0.82
CDX2Q99626 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms