Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 AC104417.2-201ENST00000562989 1793 ntBASIC19.17■□□□□ 0.66
VPS35Q96QK1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 SNORA78-201ENST00000459373 127 ntBASIC19.17■□□□□ 0.66
VPS35Q96QK1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 NUDT16P1-203ENST00000513809 620 ntBASIC19.17■□□□□ 0.66
VPS35Q96QK1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.17■□□□□ 0.66
VPS35Q96QK1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS35Q96QK1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VPS35Q96QK1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 MIR4785-201ENST00000585005 73 ntBASIC19.16■□□□□ 0.66
VPS35Q96QK1 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS35Q96QK1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS35Q96QK1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 AL596275.1-201ENST00000423464 877 ntBASIC19.15■□□□□ 0.66
VPS35Q96QK1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 TSPY7P-201ENST00000431358 1114 ntBASIC19.15■□□□□ 0.66
VPS35Q96QK1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 Z85996.1-201ENST00000494644 937 ntBASIC19.15■□□□□ 0.66
VPS35Q96QK1 AC116562.2-201ENST00000507042 360 ntBASIC19.15■□□□□ 0.66
VPS35Q96QK1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 AC026471.5-201ENST00000615068 467 ntBASIC19.15■□□□□ 0.66
VPS35Q96QK1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 AL158211.5-201ENST00000623583 2518 ntBASIC19.15■□□□□ 0.66
VPS35Q96QK1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS35Q96QK1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS35Q96QK1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.14■□□□□ 0.66
VPS35Q96QK1 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS35Q96QK1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.14■□□□□ 0.66
VPS35Q96QK1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS35Q96QK1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 KRT17P2-201ENST00000300992 1314 ntBASIC19.14■□□□□ 0.65
VPS35Q96QK1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms