Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.46□□□□□ -0.09
LINC00477Q96M19 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 MIR663A-201ENST00000385250 93 ntBASIC14.46□□□□□ -0.09
LINC00477Q96M19 RPS2P52-201ENST00000469610 820 ntBASIC14.46□□□□□ -0.09
LINC00477Q96M19 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 VPS53-216ENST00000574029 585 ntTSL 4 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 AL121906.2-201ENST00000621597 723 ntBASIC14.46□□□□□ -0.09
LINC00477Q96M19 AC092437.1-201ENST00000624794 1048 ntBASIC14.46□□□□□ -0.09
LINC00477Q96M19 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC14.46□□□□□ -0.09
LINC00477Q96M19 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC00477Q96M19 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00477Q96M19 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00477Q96M19 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00477Q96M19 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC00477Q96M19 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
LINC00477Q96M19 AP006587.1-201ENST00000534129 1502 ntBASIC14.46□□□□□ -0.1
LINC00477Q96M19 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.46□□□□□ -0.1
LINC00477Q96M19 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 KRT8P8-201ENST00000434750 1448 ntBASIC14.45□□□□□ -0.1
LINC00477Q96M19 YBX1P10-201ENST00000444752 975 ntBASIC14.45□□□□□ -0.1
LINC00477Q96M19 AC083906.2-201ENST00000511578 360 ntBASIC14.45□□□□□ -0.1
LINC00477Q96M19 AC091874.3-201ENST00000512672 1195 ntBASIC14.45□□□□□ -0.1
LINC00477Q96M19 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 AC006557.6-201ENST00000623071 864 ntBASIC14.45□□□□□ -0.1
LINC00477Q96M19 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.45□□□□□ -0.1
LINC00477Q96M19 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LINC00477Q96M19 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC00477Q96M19 AL161938.1-201ENST00000569833 2180 ntBASIC14.44□□□□□ -0.1
LINC00477Q96M19 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 AL138781.2-201ENST00000617896 1843 ntBASIC14.44□□□□□ -0.1
LINC00477Q96M19 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 SLC29A4P1-201ENST00000398760 971 ntBASIC14.44□□□□□ -0.1
LINC00477Q96M19 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 ABHD17AP6-201ENST00000458502 1044 ntBASIC14.44□□□□□ -0.1
LINC00477Q96M19 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC00477Q96M19 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LINC00477Q96M19 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00477Q96M19 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms